RNA id: XM_021609844.2


Basic Information

Item Value
RNA id XM_021609844.2
length 3158
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110528056
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58121556 ~ 58138678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttcttcttattttTCTTATCCATCGTTCAGCCCTCGGAGTGCGGAGCATGCAGAGAGAttgttgatgagagagagagagagtaaggagaaaCCATGCAGTATCTGAGGCAACCCAGTGAGCCCAGTGACCGAGCCTGACAACCTGATCCCCCCCGGACAACCAGGGAACAGCAGTCTGGTCAACCACAAGACccggtgacacacacacatctccaactggagaaagagagagaaaaataggaaaagagagaaagagagggtagaccaccagatgtgtgagagagagcagagagaaggagatgctCAGAGGGACCGGACAGTGACCAGGAAGGAGAccataggaagagagagaaaggagtgcgACCACTGACAAAACACATGGGGTTGTATTGAAATCTGGATTGTTTGTAAAGTGGTGTTTGACTTTTGGTTCTGTGCTTCTGTTAATCTGAGAGACAACAGGAGTTCTGAGAGAAAGTTCTGTGGTACGTCCTGCCTACAGTACTGCCTCTTTGTGGAAGCACTGCGCTACACGACTGCTACAGGTGTTCTGAAGAGGTCCAAATATTCACCTAAGAGAAGGAGCACAGAAATAGGACAGACACATAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACACAGAAAGGAACATAGAAAGAACATACAtttagaaagaaagaaaaaaatactTCAGAAAAGCCCAGAAGAACaaagagggtaagagagagaataacaggtctagagacagacagaaacagatagaCGAAAAGACAGGATGGCGAACTCGGGTTTCCAGTTGCTAGGTTACTTCCTGGCATTGGGTGGTTGGATAGGCATCATCTCCACCACTGTGCTGCCCCAATGGAAGCAGTCTTCATACGCGGGTGACGCTATCATCACGGCTGTGGGGCTCTACGAAGGCCTGTGGATGAGCTGTGCCTCACAGAGTACGGGACAGGTGCAGTGCAAGGTGTTTGACTCCATGCTGTCACTGGACGtgCACATCCAGACGTGTCGTGCTCTTATGGTGGTGTCCGTGCTGCTGGGCTTCATAGGAATGATAGTGAGTGTGGTGGGGATGAAGTGCACTAAAGTGGGCGACAACAACCCCATCTCCAAAGGACGCATAGCTGTGTCTGGAGGAGCCCTCTTCCTGCTCGCAGgTCTGTGCACGATGGTGTCTGTGTCCTGGTACGCCACTCAGGTGTCCTATCAGTTCTTCAACCCAAACACGCCAATCAATGCCAGGTATGAGTTTGGGTCTGCCCTGTTCGTGGGATGGGCGGCGGCTAGCTTGACTGTTTTGGGCGGATCCTTCCTGTGTTGCTCCTGCTCCAATGAGGAGAGGCGAGGGCAGCAGTACTACCGCCAATCACAACCATCCACAGCCAGGGAGGCAGAGTTGTTGAGTGAGACTAGTTTCCCTGACTGACCACCCCCTGCCTTTTTTCGAGGACTGTCCGAGTTACGCTCACTGTTTCCCCTTTCCCTGTTCCTTCCTAGATCCAAAATGTGGACCCTTGTTTCTCCGCTATAGCATATGTCgcacccctctacctccctcccaccAGCCCCACATTCCCACCAACCCCACACTCCCTTCCTTAATGTCTGCACCTTATCTGTCTCTGATATTAAGTTATCGGTCAACAAAATTTCCGCCACACCTTTAAGAGCTTGCCACTCCCCTTTCCCACACCCCCTTGAGGTTGTTTGTAAATATGGACTCTGAAAGGAGAAGTATGGCTAGGTGGTTAGACCCCACCTTTCAGACTAGAGGGGTGGCATTACTGTATTTCATCCTGTGAACCCTTTACTAGAAACTCCATTTTGTCCTTTTATCGTTTTTTTACTGAACTTTAATTGTATAGGTAAGATTTGTCATGTCATGTTTTATTGATTTCTGCTTCACTGATATCCTATGATTTCTGGGTTTGTAGATATGTGCCTTTTGGTTTTGTTCTCTGAGAATACAAGTGTACATTTActgaaacatgtttttttcttttaaaTTGCAGACCAAATGTTAAAAGTTCCCCACCAGAGAAAAAGGAGGAATACTTATAGTTTGGGCGACTCCTTTGGCCCCACGATGTGTTAGATTGTTGGCAAAAGGCAAGAATCTGTCTAACAGAAACAGACAAGACACTGTCTCAATGAAAACAAAAGCAGACAAGACACTCTATAGGAAACACACTCTCAGAATGTAACAAAATAAACTCAGAATACACTTTTGAAGTAATACATCTCCAGACCAGTATTTTATCATTCTTAAAGATGCCCATGTGttaaatgtttaaatgtattttagaaTCTATTTTGTACTTTATAGTATTTTATAGTAGAGTGTTGTTACAGCAATATGCACAGGTATTGTCCGTGCTCACCTATGACATATAACTGTTATTTGGAAAATTGAGAGTGAACCTGATTCTGTACTACTACACAGAAGTGCCCAGGTGCATATACCACCACCTCCAGCCTTTCTGCTACATATATGCTCTACTGCAGTGCCTTataacgtgtgtctgtgtgtatgtttttgaCTGTTATACACGGATTCCGCAGTGTCACATCCTATATGGATGATGCATATCGTACCCGTATTGTAAAACATATCCATGCTCGTCTTTTTCTCTTGCATTAAATGAACCATTCAGACAAACTGTTGCATGCAGTTTTATCTCGGAACATAGATGTACTGTAGCTAGTATACCACTTAAAAAAcaacagaaagacagatttgtaaATGGCCCTAACTGATGAAAGCGAAGGCACACCTTGTCAAAGCTGTGAGCCTGTTTGGAAGTAGTACATGTACTGTATCCCGGATTGAGGTTATTATACCTGCATTCTGTTTAGTTAAGTGCCAATATGATTTATTGTGGATGGAAGAGATGTTTTGTTAATGACTATGGAGGATATTCTGTACTCCAGGTGCTGAAAGCACTGTCTCCCGTACAAGCCCTGTATTGGCCAGTTTGCAGAATGTAATCAGGTCAATCGTGTTTTTCTGTTGCATACATTTAGTTACCATATATTTTCTTGATCTAATATTCActattattattttactgtatGTATCATCTCATTTAATGTATACTCCTGTCTGTTTCTTTTAGAATAAAGTAAACGGATAAAAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714862 lncRNA downstream 8880 58112421 ~ 58112676 (-) True G628712
TU714858 lncRNA downstream 11816 58109524 ~ 58109740 (-) True G628708
TU714855 lncRNA downstream 14558 58106740 ~ 58106998 (-) True G628705
TU714850 lncRNA downstream 25119 58096202 ~ 58096437 (-) True G628700
TU714847 lncRNA downstream 28296 58093047 ~ 58093260 (-) True G628697
TU714876 lncRNA upstream 1828 58140506 ~ 58141151 (-) True G628726
TU714889 lncRNA upstream 39031 58177709 ~ 58178222 (-) True G628739
TU714897 lncRNA upstream 62426 58201104 ~ 58201409 (-) True G628746
TU714901 lncRNA upstream 66965 58205643 ~ 58205909 (-) True G628750
TU714922 lncRNA upstream 87179 58225857 ~ 58268848 (-) True G628765
XM_021609839.2 mRNA downstream 316288 57794775 ~ 57805268 (-) True LOC110528053
XM_021609838.2 mRNA downstream 332397 57782135 ~ 57789159 (-) False LOC110528052
XM_021609837.2 mRNA downstream 363025 57752075 ~ 57758531 (-) True LOC110528051
XM_021609835.2 mRNA downstream 392239 57712894 ~ 57729317 (-) True LOC110528050
XM_021609834.2 mRNA downstream 392244 57712894 ~ 57729312 (-) False LOC110528050
XM_021609845.2 mRNA upstream 41180 58179858 ~ 58192252 (-) False LOC110528058
XM_021609846.2 mRNA upstream 41180 58179858 ~ 58192252 (-) False LOC110528058
XM_036983610.1 mRNA upstream 41180 58179858 ~ 58192253 (-) False LOC110528058
XM_036983611.1 mRNA upstream 41180 58179858 ~ 58192254 (-) True LOC110528058
XM_021609851.2 mRNA upstream 94778 58233456 ~ 58239495 (-) False LOC110528061
TU714864 other downstream 3434 58117190 ~ 58118122 (-) True G628714
TU714707 other downstream 248225 57872050 ~ 57873331 (-) True G628575
TU713380 other downstream 1062986 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 1252105 56853817 ~ 56869451 (-) True vamp3
TU713290 other downstream 1252181 56853817 ~ 56869375 (-) False vamp3
TU715047 other upstream 287497 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 553139 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 553139 58691817 ~ 58695767 (-) True LOC110528083
TU715243 other upstream 568894 58707572 ~ 58713574 (-) False sfrs3
TU715244 other upstream 569292 58707970 ~ 58713574 (-) False sfrs3

Expression Profile