RNA id: XM_036983610.1


Basic Information

Item Value
RNA id XM_036983610.1
length 3581
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110528058
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58179858 ~ 58192254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCGACTCCCAGTTAATCCCACCCACCGACAGAAGTTTGCAGGCCCCGGCTAAACTTCCAGCTCACTTCTCTGCCGACGACTGCTCCTTTCCACGTAGAGGTCCCATTTTCCAGAATGCTGTGGCGTTTTGTAGTAGCGATTTTAGGCGTTTGCATCCCATATTGCCTTTCGGACGTGCAgctcagtagtaatgttattctGGAACCTTATGATCTGCTGTTCGACACCGCGGTGGAAGCCTACTACAAGGGGGACTGGATGACGGTCATTCTGAACATGGAGAGAGCGCTTCGGAACAAGGCTGCGATTCGCAGGGTGAAGGCGCATTGCCGGATAACTTGTGCCAACCAGAGCGCTTTCGGGGAGCCTTTATCCAGCATGGTCGTGCCAGTACCAGGCGCTGGCTCCGTGGAAGATCTGGGCTTTTTCCAGAAAATTATGAAAAGGGCTGATTGTGTAAATACCTGCGAAAGTGAGAAAATTGGACCACCAACTATCCATAAAGTCACTGAAGATGTGGACCTTGAGTTTAAGAAAAGAACCCCCTACAATTACCTGCAAGTCGCGTACTTCAAGATCAACAAGCTGGATAAGGCTGTGGCGGCGGCAAACACCTTTTTCCTGGCCAACCCAGACCACATGGAGATGAAGCAGAACCTGGACTATTACAGGATGATGGCAGGAGTACAGCAGGAGGACTTCAAAGACCTGGAGGCCCGGCCGCACATGGCAGAGTTCCTTGCAGGGAAGCGGTACTACAGCTCAGACTCGTTCGGTCTGGCCATCGACCACTTTGAGGCGGCAGTGGAGGAGTACTTTAGCGCGGACCAGGAGTGCCGGGCGCTCTGTGAAGGAGCTTACGTCTACGACGGATACAACTACATGGAGTACAGTGCCGACTTGTTCCAGTCCATGACAGACCACTACATGCAGATTCTGAACTGTAAGCAGAAATGTTCTGTGGAGCTAGCCTCCACCGTGGGAAAGGACAAGCCATTTGAGGATTTCCTCCCTTCCCACTTCAACTACCTACAGTTCTCTTACTACAACAgTGAGAAGTATGAGCAGGCCATAGAGTGGGCTAAAACCTACCTGCTGTTCCATCCAGAGGAGGAGGTGATGAATCAGAACCTGGCTTACTACTCCGCTGTGCTGGGGGAGGACAAGGCTGCAGCCATATCCGCTAGACTGGTGGTGAAACAGCATATTCAGCAGTCCCTGTTGGAAAAGGAGCTACTCTACTTTGCTTATGAAGTGTTTGGAATCACCTTTGTTGATCCGGATTCCTGGACCCCTGCAGACGTCATGCCCCTCAAACTGAGAGAGAAGCAGAAGGCAGAAAGGGAGACTGCGGCGAGGATCACTGAGGAGATTGGGAATCTGATGAAGGAGATTGAAACTCTGGTGGAGGAGAAGAACAAGGAGTCGACTGACATTGCCAAGATCGTACGAGAAGGTGGTCCTTTGTTGTTTGATGACATCAAGATTACTATGTCGTCAAAGCAGCTGAATGGGTCTCAGAGGGTTCTACTGGATGGATTTATCTCGAATGACGAGTGCAGAGAGCTCACCCGCCTCTCTAATGCGGCTGCGCTGAAAGGTGATGGGTATCAAGGCCATCCCTCCCCCCACTCACCCAGCGAGAGCTTCCAAGGAGTCACTGTCCTCAAGGCTATTAAGTTGGTACAGGAGGGCACTGTGCCCCTGAAGAGTGCCCGCCTGTTTTTTGACATGACTGAGAAGGTGCGTGGGGTCCTGGAGTCGTACTTCcgcctggactctcctctctacttctcctACTCCCACCTAGTCTGCCGCTCCGCCATCGACGAGAAGCAGGATGGCCGTGACAACCTGAGTCACCCGGTTCATGCAGACAACTGCCTGCTGGTCTCTGAGCTCAATGAGTGCATTAAAGAACCACCTGCATACACAAACAGGGACTATagCGCAATCCTCTATCTGAATGATGACTTTGAAGGAGGAGATTTCATTTTCACTGAACTGGATGCCAAAACGGTCACAGCGGAGGTGCGTCCTCAGTGTGGTCGTGTGGTTGGGTTCGGTGCTGGGAATGAGAACCCTCACGGGGTGAGAGCGGTCACTAAGGGCCAGAGGTGTGCTGTGGCCCTGTGGTTCACCCTTGACCCCAAACATGAGGAGAAGgacCGGATCCAAGCTCAAGAGATGCTGAAGATGTTCTCCTCTCCTACGGACACAGAGTtcacaaagacaaagacagagagctcACAACCACAGCTTACACCTCTTGACCAGTCTGCGCTTCTTGGTCAAGCTGCAACCCTAGTCCAGGAGCAGGCATACCAACCAGATGACAAACCAGCAGAGAAGAAGCCTGAGGAACCAGCAGAGAAGAAGCCTGAGGAACCAGCAGAGAAGAAGCCTGAGGAACCAGCAGAGAAGAAGCCTGAGGAACTAGCAGAGGAGAAGCCTGAGGAACCAGCAGAGGAGAAGCCTGAGGAACCAGCAGAGAAGAAGCCTGAGGAACCAGCAGAGAAGAAGCCTGAGGAACCAGCAGAAACAGTTAGTGAAAAGCCATCTGATTATCCAGAGGATAAAAAGAATGAGAAGCCGATAGAGAAGCACGCAGAAAAACCCATTGCAAAAAAGGGTAACAAAGCTAAGGTGAAAGAGCTGGTCAAAACTAAAGCAGCGGATGCATCAAAGAACAAAAAAGCGATGACTCAAACAGTGGCTAAAGCAGGGGACAAAGCCAACGCTAAGACAGCAGACAAGGTTAAAGCAGGGGACAAAGCCAACGCTAAGACAGCAGACAAGGCTAAAGCAGGGGACAAAGCCAACGCTAAGACAGCAGACAAGGCTAAAGCAAAACCTGCAGCAAAAACAAATGTCAAACAGCCAGCGACAAAAAAGACAGAGAAAATCCCTGTCAAAAAGGTTTTCAAGGACTCCAAAACTGACCTCAAGTCATCCTCGGACTCACAGACAGACAAGGACGAGCTGTGAGACCAACAGCACCTGTGACTGTTATTCTGTGgtgtcttttttttctactgtttgAATATATTTGTCAAGGTTGTTTCTGTGGATGTGCTGGATAAAGATCTGAGGTTGTTTGCTGTATTGTTTTGGATGTTGTTTGTCTGCCCAATAATGGTGGTAAAGAACAAGGATATGGTGTTGTAATGTAAGCCATACCGTAATACCAAGGGACTGCAAACTCACTCTGATGGCTGatgtcaaccaaccaatcaatcaaatcaatcaatcaaattagaTTTCTATAGTGCTTTTTCACAAATACATTTGTCACAAAGTGATACATTGTAACCACCTTTGAATACCTATCCCAGACTCATGTGAACagataatttatatatatatatatataataataataatattacatttgtttaTGATTTTGGATTCTCAGTCTGCTATTTTGTACTGTTTTAAAATATACTGTTCTTTGCCTCAGGAATTGGAAGATGTAATGTCCTCCAAAAAACAGGAAAGAACAACAATGAACAAATGTGTCTGAATAGAGACTGATACCTGAGTCATGTGGATACGCTAAATAAAAGTACAGTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714889 lncRNA downstream 1636 58177709 ~ 58178222 (-) True G628739
TU714876 lncRNA downstream 38707 58140506 ~ 58141151 (-) True G628726
TU714862 lncRNA downstream 67182 58112421 ~ 58112676 (-) True G628712
TU714858 lncRNA downstream 70118 58109524 ~ 58109740 (-) True G628708
TU714855 lncRNA downstream 72860 58106740 ~ 58106998 (-) True G628705
TU714897 lncRNA upstream 8851 58201104 ~ 58201409 (-) True G628746
TU714901 lncRNA upstream 13390 58205643 ~ 58205909 (-) True G628750
TU714922 lncRNA upstream 33604 58225857 ~ 58268848 (-) True G628765
TU714926 lncRNA upstream 52534 58244787 ~ 58269773 (-) True G628768
TU714947 lncRNA upstream 79111 58271364 ~ 58271743 (-) True G628787
XM_021609843.2 mRNA downstream 41180 58121556 ~ 58138678 (-) False LOC110528056
XM_021609844.2 mRNA downstream 41180 58121556 ~ 58138678 (-) True LOC110528056
XM_021609839.2 mRNA downstream 374590 57794775 ~ 57805268 (-) True LOC110528053
XM_021609838.2 mRNA downstream 390699 57782135 ~ 57789159 (-) False LOC110528052
XM_021609837.2 mRNA downstream 421327 57752075 ~ 57758531 (-) True LOC110528051
XM_021609851.2 mRNA upstream 41203 58233456 ~ 58239495 (-) False LOC110528061
XM_036983618.1 mRNA upstream 41203 58233456 ~ 58239499 (-) False LOC110528061
XM_036983617.1 mRNA upstream 41203 58233456 ~ 58239514 (-) False LOC110528061
XM_021609850.2 mRNA upstream 41203 58233456 ~ 58239552 (-) True LOC110528061
XM_036983620.1 mRNA upstream 50444 58242697 ~ 58253037 (-) False LOC110528062
TU714864 other downstream 61736 58117190 ~ 58118122 (-) True G628714
TU714707 other downstream 306527 57872050 ~ 57873331 (-) True G628575
TU713380 other downstream 1121288 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 1310407 56853817 ~ 56869451 (-) True vamp3
TU713290 other downstream 1310483 56853817 ~ 56869375 (-) False vamp3
TU715047 other upstream 233922 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 499564 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 499564 58691817 ~ 58695767 (-) True LOC110528083
TU715243 other upstream 515319 58707572 ~ 58713574 (-) False sfrs3
TU715244 other upstream 515717 58707970 ~ 58713574 (-) False sfrs3

Expression Profile