RNA id: XM_021609850.2


Basic Information

Item Value
RNA id XM_021609850.2
length 1557
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110528061
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58233456 ~ 58239552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTTAGTGGGTTTATGTGCAGTCAGTCAGTGCCATGGTCTCCTGACTGTGATTGGCGGGAGTGGGCGATGGGACAGAcagaggtggggagagggggctTGAAGGCGGGGCGTTACAATGTGGCGCTCGGTCAGACTGCTGAAGACGGACGCATGAGACTTGCGGATCGCCGGAGAAAATAAAAATAAGTGTCAGTCTACCTCCACACAGAACACGACCATGAGAGTCCTCCTACTGCTCTCCATGCCAGTCCTTCTGCTAGCCCAGCCCCCACTCTACCAAGAACCCTTTCCTTTCCTGGAGGACTATGACCCTGATTATTTTCCTGagAATCCTGACACGGATGTCCAGCAGCAGGTCTTGTTACATGGTCCTCGACCATTCCCTGAGCCAGAACGTCCTCGTCCATCTGagccagagacagagcccACAGAACCTGGCCCCCTAGaTTGCCGAGAAGAGCAGTACCCCTGCACCAGACTCTACTCTATTCACAAGCCATGCAAACAGTGTCTGAATAGCCTCTGTTTCTACAGCTTGCGAAGGGTGTATGTGATCAACAAGGAGGTGTGTGTCAGGACCGTGTGTGCGCATGAAGAGCTGCTAAGAGctgacaTGTGCCGTGACCAGTTCTCTCGGTGTGGTGTAGCGGCGGTGAGTGGCCAGTGTGGGTCACTGGGGAGCAGCTGTGGGAAGAGCTGTGGAGGCTGTTGAGAACATGGACACATCAGAGAGAACTCCAGCCCAAATACTGCCACATCTCTTAGGGTCCACATCCCACCCCCTAcacccttctcttcctctgtcccatCTCTTTTCCTGTTTAATCTTCGACTGTATTCCACATAATCTTTGGTTCCAAAAAACTCCTCTATTTGTTTATTTTCTCTACTTCTCTAGTGACTTTCCCCATCATCCCTTTTTTCATCTCTCTTTCAGAATGATACACAATGCAAGGTGGGATCAGTAGAATGTGTGTATGTCTAAACATATTATTTCATATTCAACAGAACATTGATGACTGTATAACATAACTGGTGCTATAAAATCACTAACATACTGGTGCTAAGGAATTGAAATCAGCACTCAAGAGATGCACATAAAACAATCTTGATCTTGTTTTTTTTGCCTTACTGTATCCTATATTCTACATCATTGtgtggtgtttgttgttgtttactgTACCTTTGTTGAAATCAGTCATAGTAGTGAGGGAACAGCAAGAGTGGCAGCCACTGTGCACTGACCTCAACAACAGAGGCATTATCAGCACTCAATCATCATCCCACTGCCTCTGCACTTCCTGGGTGGCGAGCATCCACAATCAGACTTGAAGAGACGGATTCTGACCTGACGCCTGATCTCTCCTGAAAGTGTTTTTGTGTAACACGGTCGGCCACATGACTAGAGCTACGGTGGCTGGTGACCTTGCAGTGAGTGCATAGTTTCACATATCAGAGGCAAGAAGTGGCGGCTCATAAATTGTTACTGTACTACTGCTTTGTAAAACCCTTTCACTATAATGGAggagaaaataaatgttttttttactacaa

Function

GO:

id name namespace
GO:0001527 microfibril cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714901 lncRNA downstream 27547 58205643 ~ 58205909 (-) True G628750
TU714897 lncRNA downstream 32047 58201104 ~ 58201409 (-) True G628746
TU714889 lncRNA downstream 55234 58177709 ~ 58178222 (-) True G628739
TU714876 lncRNA downstream 92305 58140506 ~ 58141151 (-) True G628726
TU714862 lncRNA downstream 120780 58112421 ~ 58112676 (-) True G628712
TU714926 lncRNA upstream 5235 58244787 ~ 58269773 (-) True G628768
TU714947 lncRNA upstream 31812 58271364 ~ 58271743 (-) True G628787
TU714950 lncRNA upstream 34508 58274060 ~ 58274287 (-) True G628790
TU714951 lncRNA upstream 35235 58274787 ~ 58275029 (-) True G628791
TU715046 lncRNA upstream 189931 58429483 ~ 58434914 (-) True LOC110528069
XM_036983611.1 mRNA downstream 41202 58179858 ~ 58192254 (-) True LOC110528058
XM_036983610.1 mRNA downstream 41203 58179858 ~ 58192253 (-) False LOC110528058
XM_021609845.2 mRNA downstream 41204 58179858 ~ 58192252 (-) False LOC110528058
XM_021609846.2 mRNA downstream 41204 58179858 ~ 58192252 (-) False LOC110528058
XM_021609844.2 mRNA downstream 94778 58121556 ~ 58138678 (-) True LOC110528056
XM_036983620.1 mRNA upstream 3145 58242697 ~ 58253037 (-) False LOC110528062
XM_036983619.1 mRNA upstream 3146 58242698 ~ 58253037 (-) True LOC110528062
XM_021609854.2 mRNA upstream 27183 58266735 ~ 58276595 (-) True LOC110528063
XM_021609856.2 mRNA upstream 38300 58277852 ~ 58282299 (-) False LOC110528064
XM_021609855.2 mRNA upstream 38300 58277852 ~ 58282613 (-) True LOC110528064
TU714864 other downstream 115334 58117190 ~ 58118122 (-) True G628714
TU714707 other downstream 360125 57872050 ~ 57873331 (-) True G628575
TU713380 other downstream 1174886 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 1364005 56853817 ~ 56869451 (-) True vamp3
TU713290 other downstream 1364081 56853817 ~ 56869375 (-) False vamp3
TU715047 other upstream 186623 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 452265 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 452265 58691817 ~ 58695767 (-) True LOC110528083
TU715243 other upstream 468020 58707572 ~ 58713574 (-) False sfrs3
TU715244 other upstream 468418 58707970 ~ 58713574 (-) False sfrs3

Expression Profile