RNA id: TU714297


Basic Information

Item Value
RNA id TU714297
length 499
lncRNA type sense_over
GC content 0.54
exon number 5
gene id LOC110528978
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58254627 ~ 58265496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCACGGGTTGGCAGCTCCGGTGGTGGTGGCGATAAACCCAAGGACAAATTGAGCAATTTCGACCCAACAGGGCCAGCGCGAGCGACCCAGGCGGTAAAGAAGCTCGACAAGTCTAGGGTATGAGGCAGCAGTGGAGCAGCTGAAGGGGGATCAGCTGCGTATtcaaggggaggagagaagaaaaacTGTCGGCGAGGAGACCAAGCAGCATCAATCGAGAGCACAGTTCCAAGACAGACTTGCCAGACAGAGGTATGATCAACTCAAGCAACAGCAAGCCCTGAATGAGGACAACCTTCGCAAACAGGAGGACTCTGTGCTTAAACAGGAGGCTATGAGGAAAGCAACAATCGAGCACGAGATGCAGCTGAGGCACAAGAATGAGCTGCTACGTGTAGAGGCAGAGTCTAAAGCACGTGCATGTGTTGAACGGGAAAACGCAGACCTCATCCGCGAGCAGATCCACTTCAAGGCAGCAGAGCACAGACTATACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714291 lncRNA upstream 14639 58240412 ~ 58242251 (+) True G628224
TU714285 lncRNA upstream 51669 58205001 ~ 58205221 (+) True G628218
TU714284 lncRNA upstream 51938 58204488 ~ 58204952 (+) True G628217
TU714283 lncRNA upstream 54085 58202383 ~ 58202805 (+) True G628216
TU714282 lncRNA upstream 62494 58194145 ~ 58194396 (+) True G628215
TU714295 lncRNA downstream 507 58261752 ~ 58262745 (+) False LOC110528978
TU714296 lncRNA downstream 1740 58262985 ~ 58263794 (+) True LOC110528978
TU714310 lncRNA downstream 9560 58270805 ~ 58271045 (+) True G628240
TU714333 lncRNA downstream 36543 58297788 ~ 58364064 (+) True G628255
TU714425 lncRNA downstream 182679 58443924 ~ 58448516 (+) True G628344
XM_036983614.1 mRNA upstream 23436 58206944 ~ 58233454 (+) False LOC110528060
XM_036983615.1 mRNA upstream 23436 58206944 ~ 58233454 (+) False LOC110528060
XM_036983616.1 mRNA upstream 23436 58208028 ~ 58233454 (+) True LOC110528060
XM_036983612.1 mRNA upstream 56634 58196427 ~ 58200256 (+) True LOC110528059
XM_021609847.2 mRNA upstream 57449 58195725 ~ 58199441 (+) False LOC110528059
LOC110527127 mRNA downstream 28180 58289425 ~ 58291045 (+) True LOC110527127
XM_036983622.1 mRNA downstream 145540 58406785 ~ 58411255 (+) False LOC110528068
XM_036983623.1 mRNA downstream 145540 58406785 ~ 58411255 (+) False LOC110528068
XM_036983624.1 mRNA downstream 145540 58406785 ~ 58411255 (+) True LOC110528068
XM_021609869.2 mRNA downstream 208867 58470112 ~ 58500215 (+) False LOC110528073
TU714108 other upstream 265018 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 660839 57579050 ~ 57596051 (+) False G627035
TU712996 other upstream 660839 57579050 ~ 57596051 (+) False G627035
TU712999 other upstream 660839 57579050 ~ 57596051 (+) True G627035
TU712997 other upstream 671046 57542882 ~ 57585844 (+) False G627035
TU714457 other downstream 242305 58503550 ~ 58504077 (+) True LOC110528980
TU714554 other downstream 447050 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 447050 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 757100 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 807425 59068670 ~ 59084729 (+) True LOC110528099

Expression Profile