RNA id: XM_021608280.2


Basic Information

Item Value
RNA id XM_021608280.2
length 2335
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110527128
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58310330 ~ 58313518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTGGGTAACTAGGGAAATGCCCTTTGCTGTGATTTTAGGTGGATGGGTATGGTAGGAACTACTTTGTATTTGTCTGGTGTCCATGGTGATTTTACATTGGTAGTTCTGTGGGAGGTTGGGCTTGTGttcaatgctacagaaagagTGAGTGTTTATGAAAGTGTACCTATAATAGATGGGCAGCAATCAATATCTATTTTGCTGTGCATTTGTATCTATGACCAAGAGTTGTTGATATTTGGAATAAAACATCAATCAGTGGATTAGAGGCTGCAGACAGATACTGGAATATAACTACTCTTAGAAGAAACTGGGAAAACAGGGCCCTGGATTAGGATCTAAAGAGACTGAAGAGTATTCTACCCAGAACTCTAACTCTaattcagtagctgagatggagACCCCAATGCCGGAGTTGAGAGATGCGGAGCCAGTGGAGATGGGTCTCGGTGTCAACGGGTATCCCTTACAGAACGCCCTCTACATAATCTTGGTCCTGCTGGGTATTGTGGGTAACGCCACGGTGGTTGGCGTAATTAGTGAGAGCGTATTCACAGACCCCAGTGGAGGACGTAACTCAGACATCATCCTGATAAACATGGCCCTCTCCAACCTGCTCCTTTCTCTGCTGAGGAACGTCCTGCTGGTCATGTCTGACCTGGGGCTGGAGctgaaCTCTTCCAGAGACGGGTGTCACGTCCTGATGGGGGTGTGGGTGTGGATTCGCTCAGTCAACGTATGGTCAACACTCTTCCTCAGTGCTTTCCACTTCCAGACACTGAGGCGCGTGGCCCCTCCCCCTGGGACTGTTCACGGACCCCGCAGGCCCCCCAAGACCCTCCTGATTAGCCTGGGCCTCATCTGGTATCTCAACCTGATCTATGCTATACCTGCACACATCTACTCTACTAACGGGAACAAGAACAGCACAGAGACCCTGATTTTGGTCAGCAGCACCACGCGCCCCCTGCTGGGCTGTGTGTGGAACTTCCCCTCCAGCTACAATACCCTGGcctacaccaccacctccatggtGATCCACGAGATCCTGCCTATCATCCTGATGGCCATCACCAACCTGGGCTccctctacacactctacacccACGGCAGGACCCGCAACCCAGCACACATGACCCAGGACGCGCCCGTCATCAAGAGGATACCGGCTGAGAGACGGGCTGCCAAGGTGATTCTAGCCCTCACCATCCTCTTCATTGTGTCTTGGGGAACTAGCATCATCTCTATCAACTACTTAAACTACAATAAAGGATCTTCAGACAGGTTTCTCCCGATAATAGCTCGCTTTGCCAACAGCATCTTCATCGCATTTTCGCCCATCGTGCTGGCAGTGGGTCACCGGCGGCTGCGTGCTGTTGTTAAGTCTTTTCTTACTCACTGACAGGTCCCACACCCTGAATCACACTGCAACTGACATTATGGGGAAGCCAGTGGAAAAATATTATACTTCCCTTCACATAGCCTAATAATAAAGTAGACTTACATGTTTGTTGGTATTCCTCTAACCATTGGCAAAAATGATGAGGTCATCTGTGCTCTTTTAAGGTACTTACTACTAACTGAGCAGTATATTTTCCATGTGTGGTAGGAGTCAAAATAAGAATACTGGGAGAGATGGAGGCTCGCACACTGTCGAAAAAACTAAACATCCAAAACCCCCTTGTGGCCCCCCTAAATGTGGAGTATGAATTAATTTTTACATACAGTAACTCATTTTTGCTATCATTCTTTTTTTACATCCATTATTAGACAGTGGCAAAGATGATGATTATGAACATGGTCTTCTGCCTGCTAATGCCTGCAATGCAGTGAAGAAAACGATGTCAACAATAACGTTCTAATGTAACTTGcacctctaacagtacaactggccccagcttggccCCCCCAGTTGAAATGGTCTAGAACCGCCACTGCATGGTGCCCAAAAAATCAGAGTGCAAGAAAGTGCATAAATGAAAgtgaaaacaaaacacaaacGTTTCGGCCTCAGGTCATCATCAGTTTAACCATTGGCAACCATTTTGATCCTCTTAGGCAGACTGTTTTAACATGGTGCTATGAGAGTCAAACCCATTCATTTATTATTTTATGACAATTTCTAAGAATGTATTGATCACTGAGGAAGACCACTGTTTGTTTGTCAGTGAGATTACATGAACACAATTTATTTCTGGAAACCTGCTCTTTTGTGAGCGACAGAATGTTTTTGATGTATAGACTGTACGTGAAAGGGCACTCCTATCTATAGATAGTTGTTGTTACATGTTCTGTCTTGTTTGCTCTTTAAAAAACAGTCAAAATAAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU714951 lncRNA downstream 35301 58274787 ~ 58275029 (-) True G628791
TU714950 lncRNA downstream 36043 58274060 ~ 58274287 (-) True G628790
TU714947 lncRNA downstream 38587 58271364 ~ 58271743 (-) True G628787
TU714926 lncRNA downstream 40557 58244787 ~ 58269773 (-) True G628768
TU714922 lncRNA downstream 41482 58225857 ~ 58268848 (-) True G628765
TU715046 lncRNA upstream 115965 58429483 ~ 58434914 (-) True LOC110528069
TU715068 lncRNA upstream 139459 58452977 ~ 58456840 (-) True LOC110528071
TU715053 lncRNA upstream 156667 58470185 ~ 58496244 (-) True G628878
TU715144 lncRNA upstream 248885 58562403 ~ 58563031 (-) True G628966
TU715147 lncRNA upstream 253050 58566568 ~ 58567078 (-) False G628969
XM_021611141.2 mRNA downstream 17334 58291286 ~ 58292996 (-) True LOC110528979
XM_021609857.2 mRNA downstream 23951 58283744 ~ 58286379 (-) False LOC110528066
XM_021609858.2 mRNA downstream 23951 58283744 ~ 58286379 (-) False LOC110528066
XM_021609859.2 mRNA downstream 23951 58283744 ~ 58286379 (-) True LOC110528066
XM_021609855.2 mRNA downstream 27717 58277852 ~ 58282613 (-) True LOC110528064
XM_021609860.2 mRNA upstream 9350 58322868 ~ 58345203 (-) True LOC110528067
XM_021609864.2 mRNA upstream 112162 58425680 ~ 58437154 (-) False LOC110528069
XM_021609866.2 mRNA upstream 126722 58440240 ~ 58448738 (-) False LOC110528070
XM_036983625.1 mRNA upstream 126722 58440240 ~ 58448742 (-) False LOC110528070
XM_021609867.2 mRNA upstream 126722 58440240 ~ 58452227 (-) True LOC110528070
TU714864 other downstream 192208 58117190 ~ 58118122 (-) True G628714
TU714707 other downstream 436999 57872050 ~ 57873331 (-) True G628575
TU713380 other downstream 1251760 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 1440879 56853817 ~ 56869451 (-) True vamp3
TU713290 other downstream 1440955 56853817 ~ 56869375 (-) False vamp3
TU715047 other upstream 112657 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 378299 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 378299 58691817 ~ 58695767 (-) True LOC110528083
TU715243 other upstream 394054 58707572 ~ 58713574 (-) False sfrs3
TU715244 other upstream 394452 58707970 ~ 58713574 (-) False sfrs3

Expression Profile

XM_021608280.2 Expression in all Baseline Samples

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XM_021608280.2 Expression in each Bioproject

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XM_021608280.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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