RNA id: XM_036983622.1


Basic Information

Item Value
RNA id XM_036983622.1
length 2008
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110528068
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58406785 ~ 58411255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCAATTGTAGCATAGCAGAGGCACGCTGTCCTCTAACCTACAGAGTCACATTAGTTGTTGGCATGGGCCTCATGATGGCAAACACGCTCAGGTTATTGTTCAAGCAACTGGTTTGGTTTTTACTTGTGGAAAACTTCTTACTCTCTCCTGCTTTGTCATATACTTATAGCACTGGCACATGGCAACAACTTCCAAGGCGAACACCGCAATTTGACAATCGTCCACGCtttaaacagcctccactccaaCAAACAGTTTCAAGGCCAGTTCGAGTAGAAACTGTCGCTGTGACGTGCCATTCAGACTACATGGAGATAGTCGTGAAGGCTGATCTGTTTAAACTCGGTAATCTAATTGACGTGGATGACCTGCGACTTGGAGTTGAACAGTACCAAGACCAAGAGCCGTGTAGGGCTACAGCTTCAGCAGCCGGAGATGAGTACAGAATATTTGCAGCACTTTCGGACTGTGGAACCAAGCACatgCTGAACGAAGACTCATTGATCTACGCAAACCTCCTCAGATATACACCCAGAACCACACCAGATGACGTTATTCGAATGGCTGGTGCTGTAATCCCAATTGAGTGTCATTATGAAAGGAAGTACAGTTTGGACAGCTCTTCTCTCCAGCCGACCTGGATCCCTTTCACCGCCACAGTGTCTGCTGAAGACACCCTGCAGTTCTCATTGAAGCTTATGACAAGTGACTGGCTCTATGAGCGGGGTTCTGGAGTCTACTTCCTGGGTGATCCCATCAACATTGAGGCGTCTGTCAGGGTTGCTCACCACACCAGGTTCAGGGTCTTTGTTAGCAGCTGCGTGGCCACACTAGACCCTGATAGCAACTCTGTTCCCAGATATGTCTTCATTGAGAGTGATGGGTGCTTGTTGGATTCCCAGCTGCCTGGTTCCCGCTCTGGTTTCATGCGTAGAACCCAGGACAACAAGCTCGGGTTCCACATTGATGCCTTTAGGTTCTACCAGGAGGACAGGGCAGAGCTGTACATCACCTGCCATCTTATGGCAGTCCCTGTCATGGACCATGCAGAGCCTAGCAACAAGGCATGCTCCTTCATTGATGGCAGATGGAGGTCTGCTGATGAGAATGATTTGCTATGTGGTCATTGTTCAAGCCTGAGTAGACAGAAGGGGGTTGATCAAGCTCCAGTACAACGTCCCCTCAGTCCAAGACTAGGTGGTAGCCAACTTGAACCTCGTGTCTACCGCAACAAACCCCCAGCCTCTGGTGACAATTGGAGTATTGGGACGAAGGCCAAGAAAGTATGGGACCAGGATACTACTTTGGGCCCCATGATGGTCCTCCCAAGTAAACAGAAGAGTACACCTCTATCTCCACGGACGAGTGGCGGTATCGATATACCTGGCTTCCCTGCCTCAACAGGGGACAGGAAGCCCGTATCACCTGGCAGTCGTTGGCGTGGCATGGACTTCAAGAGAGgacCTTATTTCGCCCAATCCCAAAATGAGGTTAGTCCCTTGGGCCCAAGGGTTGGACCCAAGAACAAGCACGGTCTCGTTAGCTCTGAAACATATGATGGCTTCATCAGGCAGAAAGAACTAATCGCCCAACAAGAGCTGGAGGCCACTCCAGACCCTGAGTTGATTCCTACACCTGAGCCCATTGGAGACCTTGAGGTTACCACAGAGAAAGAGGGTCTGGATGAAGAGGAGGCTCAGTATGAGATTGGAACCTATTGAAAGGGGATATGTTCCCAGTCCACTATCAAATTTCTAGAATTGGAAGGCGCTGTTGTCATGGTGGCCCATAATAGACTTGCTCCAAGCAGCAGCACACTCCAACTCACTGAGGTTGGTGCCGGTCCTGATGTTCCAGCACACAAGGAGGATGACCCTACAACAAAGTGACATAAGCACCACATCTGCTCCTGGCGACGTCAACCAGTGAAGGGACTACCACAACACTGAGACGATATCTCAAGAGATGCCTGTTAATCtctttgaaaaataaatgatttaatgCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714333 lncRNA upstream 42721 58297788 ~ 58364064 (+) True G628255
TU714310 lncRNA upstream 135740 58270805 ~ 58271045 (+) True G628240
TU714296 lncRNA upstream 142991 58262985 ~ 58263794 (+) True LOC110528978
TU714295 lncRNA upstream 144040 58261752 ~ 58262745 (+) False LOC110528978
TU714297 lncRNA upstream 145540 58256890 ~ 58261245 (+) False LOC110528978
TU714425 lncRNA downstream 32669 58443924 ~ 58448516 (+) True G628344
TU714434 lncRNA downstream 41725 58452980 ~ 58456770 (+) True G628351
TU714456 lncRNA downstream 91000 58502255 ~ 58502647 (+) False LOC110528980
TU714516 lncRNA downstream 155320 58566575 ~ 58567078 (+) True G628432
TU714455 lncRNA downstream 178843 58590098 ~ 58590347 (+) True G628371
LOC110527127 mRNA upstream 115740 58289425 ~ 58291045 (+) True LOC110527127
LOC110528978 mRNA upstream 141289 58254627 ~ 58265496 (+) False LOC110528978
XM_036983614.1 mRNA upstream 173331 58206944 ~ 58233454 (+) False LOC110528060
XM_036983615.1 mRNA upstream 173331 58206944 ~ 58233454 (+) False LOC110528060
XM_036983616.1 mRNA upstream 173331 58208028 ~ 58233454 (+) True LOC110528060
XM_021609869.2 mRNA downstream 58857 58470112 ~ 58500215 (+) False LOC110528073
XM_021609870.2 mRNA downstream 58857 58470112 ~ 58500215 (+) True LOC110528073
XM_036983630.1 mRNA downstream 90943 58502198 ~ 58585280 (+) False LOC110528980
XM_036983628.1 mRNA downstream 90944 58502199 ~ 58589001 (+) False LOC110528980
XM_036983626.1 mRNA downstream 90945 58502200 ~ 58589001 (+) False LOC110528980
TU714108 other upstream 414913 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 810734 57579050 ~ 57596051 (+) False G627035
TU712996 other upstream 810734 57579050 ~ 57596051 (+) False G627035
TU712999 other upstream 810734 57579050 ~ 57596051 (+) True G627035
TU712997 other upstream 820941 57542882 ~ 57585844 (+) False G627035
TU714457 other downstream 92295 58503550 ~ 58504077 (+) True LOC110528980
TU714554 other downstream 297040 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 297040 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 607090 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 657415 59068670 ~ 59084729 (+) True LOC110528099

Expression Profile