RNA id: XM_021609870.2


Basic Information

Item Value
RNA id XM_021609870.2
length 2044
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110528073
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58470112 ~ 58500215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGACGAGCCCCCTTCCTGTACCCGGCTGAGGAAGTTAATTCGCTGACAGGGCTGGGTTCCGTGAGGGAGGCGAAAGAAATATAATTTACATGGTGGggataaaaacaacaacagtatAGAAGAACAAGTTGTGCAAGCACAATAAAACGTACGTGTAAAGCATATTTCCTCTCCGAGATCGTCACTGAGCGCCGCAGACATGAATGACCAGCAGCTGGACTGTGCTCTGGACCTGATGAGGCGTCTTCCTCCCCAGCAGATCGAGAAGAATCTCAGTGACCTCATCGACCTGGTGCCCAGTCTGTGTGAGGACCTACTCTCCTCTGTGGACCAGCCTCTGAAGATTGCCCGGGACAAGGTGGTGGGGAAAGACTACCTGCTCTGTGACTACAACAGAGACGGTGACTCCTACAGATCCCCATGGAGTAATAAGTATGAGCCACCCATCGACGATGGTGCCATGCCATCTGCCCGCCTGCGCAAACTAGAGGTTGAAGCCAACAATGCCTTTGACCAGTATAGAGACCTGTACTTTGAGGGCGGTGtatcatctgtgtatctgtggGACTTGGATCATGGCTTTGCTGGGGTCATCCTCATCAAGAAGGCTGGAGACGGCTCCAAGAAGATCAAAGGCTGCTGGGACTCCATCCATGTGGTGGAGGTGCAGGAGAAGTCCAGCGGACGGACCGCTCACTACAAACTCACCTCCACCGTTATGCTGTGGCTCCAGACGACCAAGACCGGGTCTGGAACCATGAACCTGGGTGGCAGTCTGACAAGACAGaTGGAGAAAGACGAGACAGTTGGAGAGTCTTCCCCACATATTGCCAACATCGGCCGCCTGGTGGAGGATATGGAGAATAAGATTCGCTCCACTCTCAACGAGATCTACTTTGGGAAGACCAAGGACATCGTCAATGGTTTAAGGAGTGTTCAGACCCTGGCTGACAAGTCGAAGCAGGAGGCTCTGAAGAACGACCTGATGGAGGCGCTTAAACGCAAACAGCAAAGCTAGAGATGCTATTTTTTTTATTCgattttcctctttctctctctgttccccgcGCAGTATCTCCACCTTACTCAACCATATTTTTTCTGTTTGTACGTCTCTCCTTCCATGCCTGTTTCAGTGCTGCACTCTTGTTCATTTGTGGGAAAAACAAAAAAGAGAATGTTtagcttttttttattttcatgcaTTGTTTTGAGGCATCTCATTCGCTTTCAAGCCATTcacccaccctgtctctctctccgtctctctctctctctgtctctcttatgTTATGAATATTATGATAGTATTCTTAAGGTTAATGATAATCTTACAGTTTTACCGCAATGTTTATAATccctacagctctgtcacagCTGAGTCTGTTTTGAATGAGTGACATCAGCTTCTCTCCTATCCTCTGGTTAGGGGACAGAATCAGATacagactgtactgtagctaggctTGGCTGGGCTAACAAATCGTCATTAATTTCCACCAACATTTTCTTTCTTGTACCCATTATATCAAAGTGTCTGTGCCACCACCTTTCTTGAAATATAACTGTCATTTTTCTGGGTGATGTAATGGCAAACGAATGGGAGAGGGTGGCCCTAGATATTATGTATTGTAAGGATTGGTCTATGGTTTGACCTTCGTCCCACTCTTACCCGCATGCGTTGTGAGTCTGAACGCATTGGATCACGGGATGGAGCTGTAGACCTCTAAAACATGGGGAGGGACTGTTAGGTTCACTGTGTATAACCATGTCATTAAGTCCCCCTCTTACACTGTGTATAACGTGATGATTTGGAtacctcggtctctctctcggtctctctctcggtctctctttcaCCTGGTCTATGTTGGGGGCACAATTTTGTCTTTTTGCGTCTTGAAGGAAGCTTTTGACCTTTTCTGTTTTGGGGGGAatctttttttgttgtattttgtttttattttgtaaagcTAATGATTCATATTTTATTAGAGCCTCCAGTAACAATAAAAACAGTAAAACTATTTATTGTAATATTT

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10365 CAPZB; capping protein (actin filament) muscle Z-line, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714434 lncRNA upstream 13342 58452980 ~ 58456770 (+) True G628351
TU714425 lncRNA upstream 21596 58443924 ~ 58448516 (+) True G628344
TU714333 lncRNA upstream 106048 58297788 ~ 58364064 (+) True G628255
TU714310 lncRNA upstream 199067 58270805 ~ 58271045 (+) True G628240
TU714296 lncRNA upstream 206318 58262985 ~ 58263794 (+) True LOC110528978
TU714456 lncRNA downstream 2040 58502255 ~ 58502647 (+) False LOC110528980
TU714516 lncRNA downstream 66360 58566575 ~ 58567078 (+) True G628432
TU714455 lncRNA downstream 89883 58590098 ~ 58590347 (+) True G628371
TU714537 lncRNA downstream 109896 58610111 ~ 58610368 (+) True G628451
TU714543 lncRNA downstream 119752 58619967 ~ 58620226 (+) True G628457
XM_036983622.1 mRNA upstream 58857 58406785 ~ 58411255 (+) False LOC110528068
XM_036983623.1 mRNA upstream 58857 58406785 ~ 58411255 (+) False LOC110528068
XM_036983624.1 mRNA upstream 58857 58406785 ~ 58411255 (+) True LOC110528068
LOC110527127 mRNA upstream 179067 58289425 ~ 58291045 (+) True LOC110527127
LOC110528978 mRNA upstream 204616 58254627 ~ 58265496 (+) False LOC110528978
XM_036983630.1 mRNA downstream 1983 58502198 ~ 58585280 (+) False LOC110528980
XM_036983628.1 mRNA downstream 1984 58502199 ~ 58589001 (+) False LOC110528980
XM_036983626.1 mRNA downstream 1985 58502200 ~ 58589001 (+) False LOC110528980
XM_036983627.1 mRNA downstream 1985 58502200 ~ 58589001 (+) False LOC110528980
XM_036983629.1 mRNA downstream 1985 58502200 ~ 58589001 (+) False LOC110528980
TU714108 other upstream 478240 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 874061 57579050 ~ 57596051 (+) False G627035
TU712996 other upstream 874061 57579050 ~ 57596051 (+) False G627035
TU712999 other upstream 874061 57579050 ~ 57596051 (+) True G627035
TU712997 other upstream 884268 57542882 ~ 57585844 (+) False G627035
TU714457 other downstream 3335 58503550 ~ 58504077 (+) True LOC110528980
TU714554 other downstream 208080 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 208080 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 518130 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 568455 59068670 ~ 59084729 (+) True LOC110528099

Expression Profile