RNA id: XM_021609874.2


Basic Information

Item Value
RNA id XM_021609874.2
length 3815
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110528081
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58671063 ~ 58677554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGACTGCGGTGGGTTTACTGCTCACATCTTTTCACGACCAATTTAATGAATGCCACCTCTTATACCAATGTAAGCTCAAGCTCAACGGAAGAGTGATCAGCTCaatccaatcagaatgagttgATTCCAGGACTGATATGGTTCGGTTGTCTCGAGGTTTGTGACAGCTTTCGCGTATAGACGATGGCGGATTCGGAATCAGACATGAGTGAAGCTGACTGAATGCACCTGGGAAGGGCCCTTTTCATATGTCGAAGGAACACTGACTTACATCAGCACACAGTGTTTTTACAGATGAATTGCTGCTTGGCACAGGGGCTTGTGTCCTGACGCTGTGGGCAGGCACATGTGCATCTGGAGAGATGGACCGCTGTAAACATGTGGGACGCCTTCGCCTGGGCCACGACCACTCCATCCTCAATCCACAGAAATGGCGCTGCGTGGACTGCTGCACCACCGAGTCCGTGTGGGCCTGCCTCAAGTGCTCCCACGTGGCCTGTGGCCGCTTCATGGAAGAGCACTCCCTCAAACACTTCCAGGAGTCACGTCACCCCCTGGCCATGGAGGTGCGGGAGCTGGACATCTTCTGCTTTGCCTGTGGGGACTATGTGCTCAATGACAACGCTGAGGGAGACCTCAAGCTCCTGCGTGGGGCACTGTCCACTGTGCGCAGCTCTGGCAGGCGCTCCCTGCGCTCCTCTGCAGGGGGGGACTGCACTTCCTGGGTGGGCGAGGGCGGGCCTCAACCAGCCATGCAAACAGCCCTGTGGCACCGCAGGAAGGTGCTGCTGGGGAAGATGCTGCGCCACTGGAGGAGCCGGCAGCAGGAGGAACAGAACCAGCGGGAGGAGAAACTTgagcaggagaaggaggaggtccGGCGCCAGAAAAACGAGGTGAAGAGGAGACTCATGGGAGAGTTTGACAATTTGCAGCCGAGGAAGAGTGCCAGGCTGCTCACCCAGGCTCCTCGCTCAACCATCACACTTATCCCCCTGAAGTTCCGTGACCCTCCGGAGCGTCTGCCTCCACCCAAGAAGCCCTCCCTTCTATCCCTGAAACCCCCCAGCAATGGCAGGACTCGTAAACTCAGAGTGCGGAGGTACTACTCCCATAAGGCAACCCATCGGAGACTGGCCCCGGGGGTCACAGGGCTACGCAACCTTGGGAACACGTGCTACATGAACTCTATCTTACAGGTGCTGAGCCACCTGCAGAAATTCAGGGAGTGCTTCCTCACATTGGACATgtgtgagactgaggagctgCTGGCCAAGACCAACCAGGGTGTGGCAGGGGGTGTGGTTGGTGGTAGTGTAGCCACACCAGGCTGCCCTCTGGGACGTGGCATGGAAAAGACAGGCATAGGGGGTCTGCCCACGGGCAGCAAGCAGAGCTCGCCCCCCTGCCTAAATGCAGCAGAACTGGTACAGCCCAAGGAGCCGCGCTCCTCCAcccgccagcagatgtcactgTGCCATGAGCTGCACACTCTGTTCAGGGTCATGTGGTCAGGCCGCTGGTCGCTGGTGTCGCCCTTTGCCATGCTGCACTCTGTGTGGAACCTGATCCCAGCGTTCCGTGGCTATGACCAGCAGGACGCACAGGAGTTTCTGTGTGAGTTGCTGGACAAGGTGCAGCAGGAGCTGGAATCAGAGGGCAGCAAGCGCAGGATCGTCATCCCCATCACCCAGAGGAAGCTCTCCAAGCAAGTGCTCAAGGTCCTCAACACCATCTTTCACGGGCAGCTACTCAGCCAGGTGACGTGTCTGTCCTGTAAGCACAAGTCGAACACGGTGGAGCCGTTCTGGGACCTGTCCCTGGAGTTCCCAGAGCGCTACCACAGCACGGAGAAGCGCTCGGCTGCGTCTCTGGCCTACCAGCGCAGCTGCTCCCTCACTGAGATGCTGGCCAAGTTCACTGAGACAGAGGCCCTGGAGGGCAGCATCTACGCCTGCAACCACTGCAACAGGAAAAGACGAAAGACGTCCCACAAGCCCCTGGTTCTGTCAGAGGCATGTAAGCAGCTGCTTATCTACCGCCTACCTCAGGTTCTACGGCTGCACCTCAAACGCTTCAGATGGTCAGGCCGGAACCACCGGGAGAAGATCGGCGTCCATGTGGCTTTTGACCAGGTTTTGAACATAGAGCCCTACTGCTGCACAGACTCTGGCCAGTCGGTCAACAGAGAGGGCTACATCTACGACCTGTCTGCTGTAGTCATGCACCACGGAAAAGGCTTTGGCTCAGGGCATTACACCGCATACTGCTACAACACCGAGGGAGgttTCTGGGTCCACTGTAATGACTCCGAGATGAATGTGTGCAGCGTGGAGGAGGTGTGCAACACTCAGGCCTACATTCTGTTCTATACCCAGAGGTCTGCCTAGACCCATCTCCCTCCCACATTTACACCCTACACCAGGGTGTACTGTCTGCCTGGAGTCAACAACCAGGCCCATCTGCCAAGGCCTGGCCTGTGGGACCGAAACCCACATCTGAGTTTGTTTCCTAGAGGTCTGCTTGGTCATGTTACACTCCCATCTACTAGCTGTAAACCAGGATGTAGCCTAGTTGTGTGTCCAGGCTTGAAACAACTCAGCCCACATTCGTTGAGTCTGGTAGGCTAACAGCCATGTGAGAGCTACTGAACGTTGTAACACAGGGGAAGGCAATGTTGATCCTGGAATGTGGCAGTGTCAGCAATGTTTTTTGCTCTATCCAGCCTCAAGACCAGCTTTTGATGATAATGATGAATTGCATATATGGTTAGTTATATTTTTCACCTGGTGTCAAAGTGCTTTACATTGTATAGGAGGTAACTTACCTCGTCCTCCAATGTTTATCTCCCTCCTGGGTTGATGAACAGCAGCCATTTGGAATGGAATCGGAATCCTCCTGTGGCTCAACTAATGGAGTTTTTCATTGTGGCTCAGCAGCGGAGATGATTGCTTGCGTCAGGTGTTTCAGAGCCTGGGTGGATTACGAGCCTGCAGATACTATCAGACACTCCAGAACCAATGTTGCCTAGCCTACCTCTGTTCTGTATTCTCAACCACAATGAGATGTCAGCCAAAAGCATTTGTCTCTAACCCAGTTGTCATCTGTATCTCACTATGACCTCTTGTTCATACACATTCTGCTGTGGATATCTCAGGCTTAAAGGCCTTGGTCTGGGCCAACGGAATGAACAGGGATAGATGGTGTGTAGATATTCCTGTGTGTACTCGGTTTCCCTACGTTGAATGGCGGTATTGGGTTGTGTGGCAGGCATCCACTTTGAAGATGGATGGAAACTATTGAGCCAACTGGCGTCATGCTGCACCTTTATGGAGGAGGGGCTTAGCTTATTGATCCAATGATCAATTGGCTTCTGATCTTTTAATGACTTCTGTATCCTGTGGCAGCTCTCTTCTCCTACCTTAATTGTAGAGGCTAGTTTGGGCTCTGGTTGGAGTTCGATGTATTGTATGTCTGTTCATGGATAGAAATAGATGGAAGAGTGAACAAAGGACTGAGAAATTGAAGAGTGTGTTGTTGTGATAGGAGAGGTACCCATTTCACGAGTGGATCACATGCAAGCAATATACGTGTGACATCATGACATGAAATCAAGATAAAATCAGGAATTCTTCAGCTTTGTAATACAATGTCTTTTTTTCTTCTACTCTGCTGTTTCTATTTGGGGTCTTTTTAAGTTAAATTTTCACTGGGCAGTTACTTTaagttatactgaacaaaaatagaaacgcgacatgtaaagtgttggtgcaatctttcatgatctgaaataaaagatcccagaaatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714544 lncRNA upstream 47728 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 50837 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 60695 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 80716 58590098 ~ 58590347 (+) True G628371
TU714516 lncRNA upstream 103985 58566575 ~ 58567078 (+) True G628432
TU714574 lncRNA downstream 35343 58712897 ~ 58718648 (+) True G628476
TU714576 lncRNA downstream 165726 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 213574 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 228873 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 241605 58919159 ~ 58920449 (+) True LOC110528092
LOC110528982 mRNA upstream 2812 58665542 ~ 58668251 (+) True LOC110528982
XM_036983633.1 mRNA upstream 15485 58640045 ~ 58655578 (+) False nuak2
XM_021609872.2 mRNA upstream 15485 58640050 ~ 58655578 (+) True nuak2
XM_036983626.1 mRNA upstream 82062 58502200 ~ 58589001 (+) False LOC110528980
XM_021609888.2 mRNA downstream 50579 58728133 ~ 58737629 (+) False LOC110528084
XM_021609883.2 mRNA downstream 50581 58728135 ~ 58736473 (+) False LOC110528084
XM_021609882.2 mRNA downstream 50583 58728137 ~ 58736473 (+) False LOC110528084
XR_002474190.2 mRNA downstream 50583 58728137 ~ 58737629 (+) False LOC110528084
XM_021609886.2 mRNA downstream 50880 58728434 ~ 58736473 (+) False LOC110528084
TU714457 other upstream 166986 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 679191 57918034 ~ 57991872 (+) False LOC110528055
TU712995 other upstream 1075012 57579050 ~ 57596051 (+) False G627035
TU714554 other downstream 30741 58708295 ~ 58713584 (+) False G628468
TU714555 other downstream 30741 58708295 ~ 58713584 (+) True G628468
TU715451 other downstream 340791 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 391116 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 1006777 59684331 ~ 59684763 (+) True G629678

Expression Profile