RNA id: TU715243


Basic Information

Item Value
RNA id TU715243
length 2126
RNA type TUCP
GC content 0.42
exon number 6
gene id sfrs3
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58707572 ~ 58713630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTATAGCTAGCAGTTCATGTCGCAGCTACAGACAGGCGTTTCGACGGAAGACTGCAAACGGATCGAGTATTAGTGTTGGTTTTACAATACGATCCAGCCATGCACCGAGATTGTCCTCTTGACTGCAAGGTCTATGTGGGAAACCTGGGAAATAATGGCAACAAGACAGAGCTGGAGAGGTCCTTTGGCTATTATGGGCCACTTCGCAGTGTCTGGGTAGCAAGGAACCCCCCAGGCTTTGCTTTTGTGGAATTTGAAGATCCAAGGGACGCAACAGACGCAGTGAGGGAGCTTGATGGAAGGACGCTAAGTGGTTCTCGTGTGCGAGTGGAGCTGTCCAATGGTGAGAAACGCACCCGCAACCGGGGTCCTCCTCCCTCATGGAGCAGACGTCCTCGAGATGACCATCGCGGGCGTCGTGGTAGCCCGCCCGCCAGGCGCAGATCTCCACGAAGGAGGAGCTTCAGCCGCAGCCGAAGCAGGTCTCTCtccagagacaggaagagggagagatcTCTGTCCCGGGACAGAAACCATAAACCCTCAAGATCATTCTCTCGATCAAGGAGCCGCTCCAGATCTACTGAGAGAAAGTAAGAAGATTCACGGCAATCAATGGATGAACAAATACAGCCATCCCTCTAGCGAGTTGTTTCATGTGATGGACTTTAAATGACCTCTGGTCAtttgtcatttttatttttaacaatcAAATGTTTAGTATTTGCTTCTTTGTGACTTTCAAGGTACATATTTCCTCTGTATTTTGTAAATAAGTGGGTATGCAGGTGTAATACGTTACTGAAAGGGCTGAACTTGAGAACCAACTTCTCATTGAAAATAGCATATAAGACATCGATGTTAGTCAAACATTTATTCCAGTGGCAAAATTGACAATAAAAATGCAAGTAGGTACATATAAAGTCCGTATCGTCCAAAACAGACTTGTGAGATTTGTGTACAAGATTTCGGCATGACTTGAGTGTTTGAGTCTCTGTATGTCTAAAAGTACCAGGTCAAGGAAAGGCCCTGTTTTAAATAGTCTAGTGCTCACGTCATGTTTCCATGTCAGCAAGATTTGTCTGGAGGTGGTAAAAGGCTATGGTCATCTATTCTATGTTGATTAATATATGTATCTTGTTGTCTAGTTGATCAATAGGATTTTGGCTGTTCTTCCAGTTCCTGTTGGTAAATATTTGTCAATGGGAATAATGGCACCCGTATTCGGGATATTGGAATCGATTTGAGAAAAAAAAGATGCAAAGTACTGAATACAATTATCTCAATTTTGGCTCTACAATATTCCATTTTCTTTTCCTTTGTACTATTTGTAATGTTCTCAATTAAAAACTGGTTGTAGAAAAGTCTTCTGTTACCATTTTGTGGGGAGATAAAATATTAAACTGTCTACAGACCATTGGATTCATCATTCATATGGAACTAGAAACGATCCAACTATGCCTCATCACAAATCAACAGGGAAGTGCTGGGCTTCATGATGACAAACAATGCATATATATCTGTTTTCTTTGGTATTGAGGCACACAGTGGATTTCCAACAAGAGGTTAGAAAATGTATTGCTTTGATTTGAGCAAACACTTTTAATAGGTCAGAACAAAAGTTTGCTCTTTTCTTCAAATTGGCGCACTCGATACTGCTTTGTTTGTTTTCAGATTCACCACAAGATGTAGCTGATTAaatggcatgatcattacacagatgcacctggTGCTGGGGACAAAATGCCACtacaatgtgcagttttgttactgCCACGGATGtgaagttgagggagtgtgcaattggcatgctgactgcaggaatgtccatcagagctgttgccagataattgaatgttcatttctttaccataagctgcctccaatgtcattttagagtgGGAATgctgctgaggagtatttctgtctgtaatgaagcccttttgtgggggaaaactcattctgagtTTCTgaggctcccaagtgggtgggtctaggcccacccatggctgcaacctgcccagtcatgtgaaatccatatattaagGCCTAATTcattaatttaaattgactgatttcttcatATGAACTGTCAGTAAAATCaataaattgttgcatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715205 lncRNA downstream 50382 58655877 ~ 58657190 (-) True ccnd3
TU715187 lncRNA downstream 66100 58640672 ~ 58641472 (-) True G629001
TU715182 lncRNA downstream 86938 58620334 ~ 58620634 (-) True G628997
TU715181 lncRNA downstream 87777 58619565 ~ 58619795 (-) True G628996
TU715172 lncRNA downstream 118582 58587072 ~ 58588990 (-) True G628988
TU715338 lncRNA upstream 99220 58812794 ~ 58816065 (-) True G629117
TU715345 lncRNA upstream 107894 58821468 ~ 58823848 (-) True G629124
TU715262 lncRNA upstream 124264 58837838 ~ 58848423 (-) False G629056
TU715265 lncRNA upstream 124264 58837838 ~ 58848423 (-) False G629056
TU715266 lncRNA upstream 124264 58837838 ~ 58848423 (-) False G629056
XM_021609880.2 mRNA downstream 11716 58693228 ~ 58695856 (-) False LOC110528083
XM_021609881.2 mRNA downstream 13104 58693228 ~ 58694468 (-) False LOC110528083
XM_021609879.2 mRNA downstream 19778 58681731 ~ 58687794 (-) True LOC110528082
XM_021609873.2 mRNA downstream 45361 58655809 ~ 58662211 (-) False ccnd3
XR_002474188.2 mRNA downstream 78309 58627335 ~ 58629263 (-) True LOC110528080
XM_036983641.1 mRNA upstream 130105 58843679 ~ 58845368 (-) True LOC118965303
LOC110528983 mRNA upstream 132893 58846467 ~ 58868216 (-) True LOC110528983
XM_021609897.2 mRNA upstream 176427 58890001 ~ 58895798 (-) False LOC110528090
XM_021609901.2 mRNA upstream 234882 58948456 ~ 58964243 (-) False LOC110528094
XM_036983651.1 mRNA upstream 234882 58948456 ~ 58970820 (-) True LOC110528094
TU715185 other downstream 11805 58691817 ~ 58695767 (-) True LOC110528083
TU715184 other downstream 13083 58691817 ~ 58694489 (-) False LOC110528083
TU715047 other downstream 278201 58426175 ~ 58429371 (-) False LOC110528069
TU714864 other downstream 589450 58117190 ~ 58118122 (-) True G628714
TU714707 other downstream 834241 57872050 ~ 57873331 (-) True G628575
TU716471 other upstream 1033876 59747450 ~ 59752591 (-) True G630132
TU716577 other upstream 1202405 59915979 ~ 59917551 (-) False G630227
TU716578 other upstream 1202405 59915979 ~ 59917551 (-) False G630227
TU716579 other upstream 1202405 59915979 ~ 59917551 (-) True G630227
TU717152 other upstream 1369472 60083046 ~ 60083857 (-) True G630747

Expression Profile