RNA id: XM_021609882.2


Basic Information

Item Value
RNA id XM_021609882.2
length 2554
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110528084
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58728133 ~ 58737629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTGGTGGAAGAGGCAGGGCAGGCCAGGAACAAGCGTCACCTCCCTCTCGCCTTCTACTACACAACGCGCATGCGCATATATCGTGGGTTGGAGAAGAAGACGCTTGTTGTTGGTGGTAGTTTTTCATACAAGTGCCATTTTGTCTACATGTCGAGAGCGCCGTGATTGGATTTTGTGTGTGGGTATTGGAGCCAATCAGAGAAACCGGGCGGCGGACAAACGCAGTAGACTGAATTGAGGCCTTTCAGAGTTCATTGACCATGGAGCAGTACACTACCGCCACCACATCTACTGGGGAACAGATAGTGGTTCAGACTGCCGCTGGGCAGATCCAACAACAGgtGCAGGGGCAGCCTCTGATGGTGCAGGTGAGCGGTGGTCAGCTCATCACCTCGTCGGGCCAGCCCATTATGGTCATGGGGGGGCAGGGAGGGCAGGGGCAGACCATCATGCAGGTGCCCATGTCTGGAGCTCAGGGGCTCCAACAGATCCAGCTGGTGCAGCCAGGTCAGATCCAGCTCCAGGGGGGACAGACTCTACAGGTACAGGGTCAGCAAGGCCAGACCCAGCAGTTCATCATTCAGCAGCCCCAAACTGCTGTGACCGCAGGACAGAACCAGGGCCAGCAGCAGATTACATTACAGCCAGGGCAGCAAGTGGCTCAGACTGCAGACGGCCAGACCATTGTGTACCAGCCAGTCAATGCTGATGGGTCCATTCTACAGCAAGGTATGATTACCATCCCTGCCTCTAGTCTGGCTGGTGCTCAGATCGTTCAGGCAGGCAACAGCTCCAATACAACAAACAGTAGTCAGGGTACAGTGACCGTCACACTGCCTGGCAACATGGTCAACGCAGGTGGCATGGTCATGATGGTTCCGGGTGGTGGTGGCAGTGTTCCCACCATGCAGCGTATCCCCCTGCCGGGGGCGGAGATGCTGGAGGAGGAGCCTCTGTATGTCAACGCTAAGCAGTACCACCGCATCCTGAAGAGACGGCAGGCCCGCGCCAAGCTGGAGGCAGAGGGAAAGATCcccaaggagaggaggAAATACCTGCACGAGTCTCGTCACAAGCACGCCATGGCAAGGAAGAGGGGTGATGGCGGACGCTTTTTCTCGccgaaggagagggaggagatggctCTGGCCATGCAGGTGAGGAGGGCTCAGGGTGCCCTCAAACAAGAGGACGTGTTTGGAGGTGTTGAACTCAACTCTAATTGGCAACCTACTTCTGTTGCCTCCCTCAGCTAACCAACAAGTAGCAGCCATTTCCACCCCTCACTCTGTCACATGTCCACCGCAGCCACTCATTTCCCCTGCACTCTTAAAATGGTCATCATTGCTATCTTTGTATGTTTTTATTATATTGGTTACCTTGTAGTTTTGTATCAAAGAATAGTATAGTTTTTCACAAGTTATGTTTTTTTTGTACTTGCTTGTTTTTTGAGTATATAGACGGGGGTGCTTTTAGATGCGGGCATATTTTTTTGTGTACCTTCTGTTGTTCTTTTGATGTATTCCAGCCACTTGATCCCTAACCATGTCTCTGGCAAACCGCACTGAGTTCAAAAGCTCGTTCTTTCACATAGAGCTCTACATACtgatcacaggaggctgctgaggggagaacaccTCATAATAATGTCCAGAACAGAAACGGAGcagatggaatggcatcaaacacctggaaaccatgtgttttgatgtatttgttACCATTCCAATTATTCTGCTCCGGTCATTATCACGAGCCCATCCGCCCcatttaaggtgccaccaacctcctttgATACTGACTCAGTAAAATGTTCTCCAATGTCATTTGAAATGCGTCTTGGCTTTGTTTGAGCTCTTGTTGCAAGCTGAAGAATGTTGGAATGTTAATGTTGCTGTTTTTGTCCAGTGTTGCTTCCTTGCTGTTGTGTTTCCTTGTTAAACTtgtaccatgttgtagtgtaaacATCTCTGCTAACACCTGTGTTCATTTAACAGCTGCAGGGCTAGGATGGGAGTGGTGTAAAGGTACTGTATGAATTTAACACAAGATCactataaaacaaatatttacttTCCTAACCTTTGTCAGTGCTGCTTCATATTATGAATGTCTTGGGTCAGACCCACCCCTCAATGTAGGTTGATTTATCCTAATTTTAAATATTAAACATGGTGCTATACATCCAACCATCCTTGGAGAAAGAGCAATAAACACCAATGCTGAACATACAGTAATTATACACACATTAAGCCTGAATTTGCAGCAGTTTTATTTATGCCCACGCAAGGTTTATTGAGAAGTTGGTAATGGCGAACCACAGGTAACAGATTAAGAATGAGgctgtgtgttttctgtgtatAATGTTTGTGTATGATTTCTGTTTTCTATTAGTTTTTATGATTGCTGACATTTTTCTGCGACTGCCACCTGTCTCATTGTCTATCATTCACatttgtgacgtgtgtgtgtgtgtgtgtgtgtttatgtatacaAATAAACATGTCTCTTTCTGTTGGTtttaatatgaataaagacttggtTTTCaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714574 lncRNA upstream 9489 58712897 ~ 58718648 (+) True G628476
TU714544 lncRNA upstream 104802 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 107911 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 117769 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 137790 58590098 ~ 58590347 (+) True G628371
TU714576 lncRNA downstream 106807 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 154655 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 169954 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 182686 58919159 ~ 58920449 (+) True LOC110528092
TU715390 lncRNA downstream 185763 58922236 ~ 58922541 (+) True G629165
XM_021609874.2 mRNA upstream 50583 58671063 ~ 58677554 (+) False LOC110528081
XM_021609878.2 mRNA upstream 50583 58671063 ~ 58677554 (+) False LOC110528081
XM_021609875.2 mRNA upstream 50583 58671286 ~ 58677554 (+) False LOC110528081
XM_021609877.2 mRNA upstream 50583 58671286 ~ 58677554 (+) True LOC110528081
LOC110528982 mRNA upstream 59886 58665542 ~ 58668251 (+) True LOC110528982
XM_036983638.1 mRNA downstream 1386 58737859 ~ 58800122 (+) False LOC110528086
XM_036983639.1 mRNA downstream 17900 58754373 ~ 58800122 (+) True LOC110528086
XM_021609892.2 mRNA downstream 68287 58804760 ~ 58816086 (+) False LOC110528087
XM_021609893.2 mRNA downstream 68299 58804772 ~ 58816086 (+) True LOC110528087
XM_021609894.2 mRNA downstream 88581 58825054 ~ 58834303 (+) True LOC110528088
TU714554 other upstream 14553 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 14553 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 224060 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 736265 57918034 ~ 57991872 (+) False LOC110528055
TU712999 other upstream 1132086 57579050 ~ 57596051 (+) True G627035
TU715451 other downstream 281872 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 332197 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 947858 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 948399 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 969480 59705953 ~ 59708053 (+) False LOC110528122

Expression Profile