RNA id: XM_036983638.1


Basic Information

Item Value
RNA id XM_036983638.1
length 5150
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC110528086
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58737859 ~ 58800122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCTTGAGCAAACGAAGGCAGAGGAGGCTCGCATCCCCCGCCCACAATTTCAGGTGACAGCTAGGCAAAACAGGCCGTTCACAACTTGCTGCACGCCAAGGAACTGCGCAGGCAACGAACCGTTTTATGACAGCAATTACTACACTGTAGTTTGTAAATATAGAATTACCAACTGATACACCAAACGGCTGTTAATTAATTGTTTCTAAATCGTGTGAATTGCAGTCCAGCTGCACAAAAAAATCCCTCTTCCGCAATATACCGAACAGTGGGGAGAAACTCGAATCCTGTAGCTAacttaactaacgttagctatacCACGGGCTAACTAATTTGTTGTACGTTTTAATTATTTATCGAAATGTCAGACACTCCGGGGGACGGAAAGTTGGAGCTGAAACAAGCCAGCAAAGAAGTAAAGGAGAGCGAGAATGTGGCTGAAAAATACTCAGCCATGACCGTGAGCAAGAACAGCGAAATTACCATGGGTGAACTGTCAGTGTCGTCTGCTGCGTTCAGTGCGGTCCCTATTCACAAACCCGTTAAAAAGCAAATCCAGTTTGTGGAAGACAAGCAGGAGTTCAGCAGGTTCCCTACCAAGGCTGGCCGACGCTCGCTGTCTCGATCCATCTCTCAGTCATCCACGGACAGCTACAGCTCCGCTGCGTCCTACACAGACAGCTCTGACGATGAGACTTCACCACGGGACAAAACACAGCTCAACTCCAAGGGCACCAGTGACTTCTGTGTGAAGAACATCAAACAGGCCGAATTTGGTCGTCGTGAGATTGAGATTGCAGAACAAGaTATGTCAGCATTAATCTCCCTCAGGAAGAGAGCCCAGGGAGAGAAGCCACTTGCTGGGGCAAAAATTGTTGGCTGCACTCACATCACTGCCCAGACTGCAGTGTTGATTGAGACTCTGGTGGCCCTGGGGGCCCAGTGTCGCTGGACAGCCTGTAACATCTACTCAACACAGAACGAGGTGGCAGCTGCCCTCTCAGAGATCGGTGTGGCGGTTTTTGCCTGGAAGGGGGAATCGGAGGATGACTTCTGGTGGTGTATCGACAAGTGCGTCAACATGGAGGGCTGGCAGCCTAACATGATCCTTGATGATGGAGGGGACTTGACCCACTGGGTGTATAAGAAATACCCCAACGTCTTCAAGAAGATCAGGGGCATTGTGGAGGAGAGTGTGACTGGGGTCCACAGGTTGTACCAGTTGTCCAAAGCAGGCAAACTATGTGTGCCAGCCATGAACGTGAATGACTCTGTGACAAAGCAGAAGTTTGACAACCTCTACTGCTGCAGAGAGTCTATCCTGGATGGCCTGAAGAGGACCACAGATGTGATGTTTGGTGGAAAGCAGGTTGTTGTATGTGGTTATGGAGAGGTTGGGAAAGGTTGCACTGCCGCATTGAAAGCCATGGGATCCATTGTCTACGTCACAGAGATTGATCCCATCTGCGCCCTGCAGGCCTGCATGGACGGCTTCAGGGTGGTCAAGCTGAATGAGGTCATCCGCCAGGTGGACGTCATCATCACATGCACGGGGAATAAGAACGTGGTGACCAGGGACCAGCTGGACCGCATGAAGAATGGCTCCATCGTGTGCAACATgggacactccaacactgagaTTGACGTGGCAAGCCTGCGGACCCCAGAACTGACCTGGGAGAGAGTGCGCTCTCAGGTGGACCACGTCATCTGGCCTGACGGCAAGAGGGTCATCCTGCTGGCCGAGGGTCGTCTTCTGAACCTCAGCTGCTCCACAGTTCCCACCTTCGTCCTGTCAATCACAGCCACGACCCAGGCTCTGGCCCTTATTGAGCTGTACAATGCTCCAGAGGGCCGCTACAAACAGGATGTCTACTTGCTGCCCAAGAAGATGGATGAGTATGTTGCCAGCCTTCACCTGCCCACCTTTGATGCCCACCTGACTGAGCTTTCAGATGAGCAGGCCAAGTACCTGGGTCTCAACAAGAATGGCCCATTCAAACCCAACTACTACAGGTATTAGCTTGCATGACTGGACCACAACTCTGCACTCCTTGACTTGGACAAGGCCTGGATGACCAGAAGATAATGAaatctatattttattttttaaagacagTTTTTGTTTTCAAATCAAGCTCTATCCCGTCATCATCTTCAGTAAATGTTACCCTGTTTCACTTGCTGTTTTGTGTGTTTAGTTTCACCATCAGTTCTGTAAATACACACCTCCTCTAAGAAACCAGCACGCAGGATCCCACTGGCCATGAATGACTAATTAATTGAAAGCACTTAAACTCTGCTCTCTGCTAGAGATGTATTTTTTTCTACAGAAGTCTGATTTCATACCCACAATCCACTAGAATAGACACTTTTTTTGATGGATAATCAGTAGTTTGTTTTATGTTTATATTATTGTGCCAAATGATTGTGTAGGGAAGGGGATCGTTGTGATTGAGATTTTATTTGTTTTCTGCATTGACGTCGCTACACGCTTCTCAAATCATTACATTCCAGCCAGGGGAACAGGGAGAAATGGCCTCTACACTAGAAAGTCCCAATTgcatttaaaggtccaatgcagctgtttgtATCTTAATATCTAATCATTTCTGGGtcacaattaagtaccttactgcgattgtttcttttttttttttactattttaattgaaaacaaacagcttcttagcaaagagcaatttctcaagcaagaattttgctaggactgtcagggagtggtctgagtgggttGGGGAAAACccgaaaactagctgttattgtcagaaaggtttggaactctcttattggtctattgaCTAATTTACCGTCTGGTGATGTCATCAGGCAGGCCAAACTCCATCCCAACAAAACAGGCTGAAacttcaggcagtcttttcaaacagcgcTTACTCTAAAAGGGCATTATTGTAATTTTAACAAttccacagccttattctagaaatatatataaaacaaaggaaatgaagtgtttgactgcactgggccttaaaCACATTGTCACATTTCCTACTGGAAACATGATACCCACATAGATGTTTATTACCAGCTGTTAATTttactgctctatcctctctccctttgGAACAGAGCTGAAATGTGATTGAATTGAAAAGATGATTACTTTTACTGACTGAACCTCCTAAGCCGtacatgtatgcatgcatgtacagTACAGAAATGTAGTTATCTTCACCAACGTGTAGATACAGGAAGGTATGTGTAACCAGAAGAGCGATTATCCAATGTGGCACTGGTTTTGATTGAGTCTCACATGGTTATAGGGTAATAACACTGAAATGTTTTGCATTAGAGGAGTCTTATCAGACTCAAATGACAATAGTGGAGTTGACATTTCTCCATCTCTGGTCCTAATTATGTGGAAATTTGTTTATTGAAATTATTTTTGAAATATTGTAGTTGGCTGATAGTTTATTGTTACTGGTATCATTTTTTTGTGTCGTGAATCCTGTTTTCTCTTAATGTTCCTAATCACCAtgttgttcttctctgttctctacATCCATACCTGCGTGTTTTCATGTCACCATCACATGGTCACTATTGTCAGTTTTTAGCAGAAAGAATAACCTTACACAGTCAACCAACTCTCCATAAGGGAGAGTTGTTTTTCAGTGGAGTAATGATCATCATCAGACTGCAAACTGCATGTTTtatggtgtttttttttatttcacccgCCGATAATATTACAGAGGGTAAATAATATGTATGTATTACCTGTGCATTTAACAGACCACTGTCACCCTGGTCTGTTAACATGGGACACTGAGTCCATTGAATACAGACCACATCTGTGCATACAATTTTAGTTTTTGCTGAGGTTTTCAGGCTTTTCTGTCCTTCCATTTTAGCTGTGTGAAACAGATACTGTTTAATTTGTGTATATGTTCGCTGATGCAACTGTGAGATAAAGCACTTTCATCTTTGCACTACTTAAAGCTGTTGGGCATTACAAGCAAGGACTTATGCGTGAGAAGAACATTGTTGGCGGGACATTGGCGTCGTAACGTTGGTTACTGGTCAAGTGACAGTGCCTTGTGACTCATCTGCTACTGTACATATTCATCACTTGTAGGATTATGTCCGTCTGCTCTCTTCCTCTTTGGAAGCTGTCCAACAGTGTTCTGATTCTGCAATATAATCGCTGTGCACAAATCTAGTGGTCTCTTATAAAGATTTGTACTTATTGGGGGGGTACCAAAACTGCTTGAAGTGTCAATATTTTAAAGTTACTTCCAGTGTGAGTTAACAAAGTAGTTTGAATTCACTTGTTTTGTAGATACCATTGTTTTTGAAAGTACAGTACATTTTGGGTATGGTCTGTATAGCACTACCAAAAGCATGCCATAAAGTAAAAATGACTCGATCGCCCAGAATTCCTTTACATGCACTGCATTGATTACAATGCTTCTATCAAGTTCCGTTTTAGTTAAATGAATCTTCCATATTTTTTATTCATTCATACTGTCATAACGATAAGGACTAGCCGGATGTCCTAATAACTGACAAATATAGTCAGTTTATGAAACATTGTCTAACAGGAGAGAGTTCTTATCTCACCAGCTTTCAAGTCCAGGGTCATTTGGCTGTTGTATGCAAcagtgctctgcaatttcacttcAACCGACGTAAATAGTGAAGAACTCTAGTGACATAATTATTATGCTTATGTGATTGATTTGTAACCATTTTTAATAATTTAATCTCGAAAATACCATATACCAAGTGACAAGTTTCACTTGTTGACAACAGTATTCAAAACCAAGTGATGTGTGAGGAGCTGAAATGTTGACCCTTTTATTATTTGAAGCAAGGATCACTGAGACGTACATGATGCGAGAATTGCTTATGTATCTCTGGTTTCGACAAAACAAACTTTTTAGCTGATTATTTGAGCTTTGCAAATGAAATCATAATGTTAGATTTATACAGTACTATGTATTATTTGTCTGTGTATTATTTGGTGAAGTCTGGCTGAGTCTCAATTCAAATTGATTTACTTGAATGCTCTCCGATGCTGTTATTTCTGTTTCTGCTTTCTGTTGGTTGATGTATACCTATCCCTTTAATAAACTTTTCTGTGTTTGAATTAAACTGCTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714574 lncRNA upstream 19211 58712897 ~ 58718648 (+) True G628476
TU714544 lncRNA upstream 114524 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 117633 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 127491 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 147512 58590098 ~ 58590347 (+) True G628371
TU714576 lncRNA downstream 43158 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 91006 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 106305 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 119037 58919159 ~ 58920449 (+) True LOC110528092
TU715390 lncRNA downstream 122114 58922236 ~ 58922541 (+) True G629165
XM_021609888.2 mRNA upstream 230 58728133 ~ 58737629 (+) False LOC110528084
XR_002474190.2 mRNA upstream 230 58728137 ~ 58737629 (+) False LOC110528084
XM_021609883.2 mRNA upstream 1386 58728135 ~ 58736473 (+) False LOC110528084
XM_021609882.2 mRNA upstream 1386 58728137 ~ 58736473 (+) False LOC110528084
XM_021609886.2 mRNA upstream 1386 58728434 ~ 58736473 (+) False LOC110528084
XM_021609892.2 mRNA downstream 4638 58804760 ~ 58816086 (+) False LOC110528087
XM_021609893.2 mRNA downstream 4650 58804772 ~ 58816086 (+) True LOC110528087
XM_021609894.2 mRNA downstream 24932 58825054 ~ 58834303 (+) True LOC110528088
XM_036983640.1 mRNA downstream 35158 58835280 ~ 58841319 (+) True LOC110528089
XM_036983642.1 mRNA downstream 78811 58878933 ~ 58889711 (+) False LOC110528091
TU714554 other upstream 24275 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 24275 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 233782 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 745987 57918034 ~ 57991872 (+) False LOC110528055
TU712999 other upstream 1141808 57579050 ~ 57596051 (+) True G627035
TU715451 other downstream 218223 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 268548 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 884209 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 884750 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 905831 59705953 ~ 59708053 (+) False LOC110528122

Expression Profile