RNA id: XM_021609894.2


Basic Information

Item Value
RNA id XM_021609894.2
length 2382
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110528088
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58825054 ~ 58834303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGTCAGTGGTATCAGTTTGCTCTCAGTTATGGCAGTGTCTGGTGTATCAGTCAGGATGGACCACCTCAGCTGTCCACTCTGTCAGGAGGTGCTCAGGACTCCTGCTGCTATTCCATGTGGGCACACCTTCTGCAGTCTCTGCATCCAGGACTTCTGGGACAATGAAGAAAAGCATGGTCGTTTCTGCAGCTGCCCTGAATGCCAATATACCTTTCACCCGAGGCCTAACCTGATCAAGAACATTGCTCTGGCTGAAATGGTGGAAGCCATGGAGAAGTCCAGGCGTAGAAATAATGTGGGTTCCGTAGGTAAGCACAGACCTGCTGCAGCCTGCCATCAGGCAGGGCCATCGTCCAGTCAGACTCAGGAAAAGGCCAGACCCATGAAGAGTCCCCAAACCCCTACAGTCTCAGAGGCCCTGAAGAGCAGAGTATGTCCCACACATGACAGACTGCTGGAGGTTTACTGCTGTGATGATGATCAATGCATCTGCCTTCTGTGCGCCCTGGTTGAGCACAAAGCACACTCCACTTTGTTCGTGAATGAGGGATGGAGCAGGAAACAGAAACAGCTCCAGGACCTTAAGAAGGAATCAAAAAGAAGGatcaaaaagagagaaaaggagcagAAGGACCTGACAGAGAGCATACAGAGGATTAAGGAAGGTAGTAGGGCTGCTGAAGAGCACTGCGAGGGCGTCCTCGCTGGGCTGATTGACTCCCTCCAGAGGCACTACTCCACCACAGTCAGAGAGCTGATCAGGGCCCAGGAGACAGCTGTAGTGGCTCAGGCTGAGAGCTCCCTGTGCAACCTGGAGACAGACATTGCTGAGCTGAAGAAGAAAGACACTGAGCTGGAGGAGCTGTCACAGACAGATGATGATATCCACTTCCTCCAGAGTTGGCCCTCTCTGTCAACCCTCTCAGAGCCCCAAAACTTGTCCAGTGTCTCGACAGATCCACACCTCCCCTTTGAGGCCATAAGAACTGCCGTTTCAGAGTTTGGGGATCGGCTGGAGTCATTCTTGGCTGGTAATGGAAGTTCCCAATCTCCAGTCAGACCTGAGCAGCTTCCAGTTATCAGCGCTGCACAGACCCTAGAGCCTACGACCAGATCTGAGTTTCTACAGTATGCCTGTGAACTCACTCTGGACCCCAACACTGCCCACAAGGACCTCTCCATCTCAATGGAGGACAGAATGGTGAGGTGGGACCCTAAAAAGCAGAAGGTCCCAGTCCAACCTCACCCTGAGAGGTTTACAAACCGTCACCAGGTGATGTGCAGGGAGGGGCTTGAGGCTGAGCGCTGCTACTGGGAGGTGGAGATGGTGGGGAACAAGGCTGAGATTGCCCTGGTCTACTGGGGCATAAACAGAAAATCACGCTCTAAGACATCCGCTTTTGGGGGCAGTGACCAATCCTGGAGCCTCGACTGTTCAAAAGGATATTCTGTGTCCCACAACAATAAAAGTATTCTACTCAGTGCAACCCCCAGCCAGCACAAAATAGGGGTTTACCTGAAATTCAAGGAGGGCACCATAGCATTTTATGAAGTCTCAGATAGGATGACGTTTCTCTACAGAACACAGAAATACACATTTACTGAACCCCTCTACCCAGGGTTCTGGCTTGGGGACGAGAGTCCCATCACACTATGTAATCTGAGGCATAAGAGATTCTAACCATGAGATAGAGAACAAAACACCCAGGAAGAGTAGGCTGTGGATAGAAGTTTAAAATAAAGCTATGCATTCGGAAAATGAATGCATGAAAATtcaaaactgtttttgttttgtcattatgtggtattgcgtgtagattgatgaggaaaaaaaacatttcatccACTTTAGAATAAGCGTAGACAAAACGTGGAAatagtgaaggggtctgaatacatccCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCcccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCcccaatgcactgtacatccCGATGCACTGTACATCcccaatgcactgtacatccccaatgcactgtacatccCGGAGAACATTTGAAAGGTTTTAGATTGCTGTTAGGTTTTGGGGAATCTTATTGTCTAAATAGATTGTAAACCTCTAAATGTTTTCATGGTTACCCTCTTTACATTTgtaatatcttttttttttataaacagttttataaatatacatataaaaGCAGCGAATAAAGAGCAAAAGTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU714574 lncRNA upstream 106406 58712897 ~ 58718648 (+) True G628476
TU714544 lncRNA upstream 201719 58622608 ~ 58623335 (+) True G628458
TU714543 lncRNA upstream 204828 58619967 ~ 58620226 (+) True G628457
TU714537 lncRNA upstream 214686 58610111 ~ 58610368 (+) True G628451
TU714455 lncRNA upstream 234707 58590098 ~ 58590347 (+) True G628371
TU714576 lncRNA downstream 8977 58843280 ~ 58852652 (+) True G628478
TU714698 lncRNA downstream 56825 58891128 ~ 58894932 (+) True G628566
TU714704 lncRNA downstream 72124 58906427 ~ 58906692 (+) True G628572
TU715385 lncRNA downstream 84856 58919159 ~ 58920449 (+) True LOC110528092
TU715390 lncRNA downstream 87933 58922236 ~ 58922541 (+) True G629165
XM_021609892.2 mRNA upstream 8968 58804760 ~ 58816086 (+) False LOC110528087
XM_021609893.2 mRNA upstream 8968 58804772 ~ 58816086 (+) True LOC110528087
XM_036983638.1 mRNA upstream 24932 58737859 ~ 58800122 (+) False LOC110528086
XM_036983639.1 mRNA upstream 24932 58754373 ~ 58800122 (+) True LOC110528086
XM_036983635.1 mRNA upstream 88581 58728617 ~ 58736473 (+) False LOC110528084
XM_036983640.1 mRNA downstream 977 58835280 ~ 58841319 (+) True LOC110528089
XM_036983642.1 mRNA downstream 44630 58878933 ~ 58889711 (+) False LOC110528091
XM_021609898.2 mRNA downstream 50203 58884506 ~ 58889711 (+) True LOC110528091
XM_021609899.2 mRNA downstream 80879 58915182 ~ 58920830 (+) False LOC110528092
XM_021609900.2 mRNA downstream 91637 58925940 ~ 58932441 (+) True LOC110528093
TU714554 other upstream 111470 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 111470 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 320977 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 833182 57918034 ~ 57991872 (+) False LOC110528055
TU712999 other upstream 1229003 57579050 ~ 57596051 (+) True G627035
TU715451 other downstream 184042 59018345 ~ 59022847 (+) True LOC110528095
TU715602 other downstream 234367 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 850028 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 850569 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 871650 59705953 ~ 59708053 (+) False LOC110528122

Expression Profile