RNA id: XM_021609897.2


Basic Information

Item Value
RNA id XM_021609897.2
length 5188
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110528090
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58890001 ~ 58895798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCCTCCCAGTAATCAATCAGAAGGCTGTTGCGTCTCTCTCTTTGTTACGGCATAGAAAGCTTGACATCATTCGGCTGTGGTCTACTCTGCTAGAAGCACTTCCGAATTCGCTTTGTTTATATGAATTATAGCCTATTGATAGGCTACTATTTTGCATCGACGTCGTGGATCCATTTGCTGTTCAACCTGCGACATTTCTCAATATCGCCTTTGATCTTCTTCAGTTTACGCCTTGAGAGGGAGCACAAGCACATGGTCGTTTGGCGGTGTATATCATATGCAGCCTAAATGCTGCATTTTGAAAACAAAGATTCCCTATCAAAAAATACATCCAACATCCTCCACCATGCTTGCACCTGACATGGTGGATGGGCTACTCTCTGGTTCCCATTGTGCCATAGCAGGAGTGTCTATTAAGGGGCTCTTTGCCCTTCTGGTCCTGACTCTCCTACTGCCTCCAGGAGCAATGACCAGCTCCAAACCTATCACCTGCCACAAAACCTGTTTGTGCGCTAGCAACATCGTCAGCTGCTCCAAGATGAACCTGACCGGAATCCCCATGGCTCTGCCTCGCTACACCGCTGTGCTGGACCTCAGCTTCAACCAAATCAGTAAACTGAAAGCTGAATGGACCCCGGTCAAGCTCAGCAAGCTGCACAGTCTCCTGCTCAGCCACAACGGCCTCACCTTTCTCTCCTCTGAGGCTTTTCTGTATGTCACATGGCTGCGTTACCTGGATCTGTCCTCAAACGGCCTGAAAATCCTGGAAGAGTTCATTTTCGAGCCCCTGGAGCACCTGGAGGTGCTGCTGCTTTACAACAACCACATCTCCCAGATCGACCGCACCGCCTTCTCGGGCCTCAATAGCCTGCAGAAGCTCTACCTCAGCCAGAACCAAGTGAAACGCTTCCCCTTGGAGCTGGTTAAGGAGAGGAACCGGCTTGAGAAGCTCACACTACTGGATGTGTCCACCAACCGGGTTAAACTCCTGCCCATACAGGAGCTCCAGGTCCTGCCTGCCTGGATCAAGAACGGTCTCTACTTCCACAACAACCCGCTGCCCTGCAGCTGTGAGCTGTACAGCATGCTGGCCCGCTGGCACCTCCAGGAGCTCAGCTCCGCCACTGACTTCAGGGACGACCACACCTGTCTACTTCCAGGCACGCAGAAGGAGAAGGTGCTTACCTTGGAGCTTAACAAGGTCCATCTAAATTGCAGCGCTGTGACCATCATAGCCGAGGAGGCCTATCTAGAGCAGGTTTTAAACCTGGGCTGTGACACCAGGCAGAGGGACGTGCTGAAGAGCTGGGTCTTGCCCGGCAATGTGCAGGTGACCTCTGGGAACCAAAGTGCTAGGGTCCTCAGCGACGGCAGTCTGCAGATCGGCCCCCTCACGCTAGAGGACTCTGGGGTCTACACCTGTTACGCAGTGGGGGACTCCCTCAACGAGACTCTGTATGTGACTGTGGAGGTGCACAACACCACTCAGGCTGGAGGGCATGAGGGCATGAAGACTGCTTACACCACGCTGGTGGGCTGTCTGGCCAGTGCGGTGATGGTGCTcatctacctctacctcacacCCTGCCGCTGCTTCTGCTGCTCAAGCCAGGGCCTGGACAAGAGGGCTCTGGGGGgcagcctccactcctctactGTCAGCGTTTCTCCCACCCATGAGGACACAGGcccagagggaggtggaggaggagggggggcctTCGATAAGCCTCCCTTTAACAGGCATGTGGCCTTCCCGGACCCAAAGGGCCTGATTGAGCAGAATGGGCGACTGAGCCcttgtggggaggaggaggaggagtggcaggaggaggacagaggaaagcagggacagagaagaaAGTCAGATGTGGAGTCTCTGAGCTCTGTGTGCTCGGACACCCCTATTGTGGTGTGAGAGGGTGTTTCGCTTCAACTAGAAGATCTTTCACATCAAAACATTTGGGGGAGGGGGAAGGATGGGCGACTCAGCTGCCTCAGTAGGACTGTGACTTGATTATTAAGCAGAAAGAGGCTATCCACTTCCCATATGCATCAGTTCAGTAGGGCAAGTAGCTTTACGTAGTGGTATTACACTATCTTGTCTTTTTTATAAGACAAGAACTTTCAACCAAATGAGGATTCATTCTCGCTAATTTATTCTGTAGCAATCTGTGTTCATCAAATGCTTCAATCTCTGTTTTAAAATACCAATATTGTTAATGCTTGTCAGTGATAGGGGGCACAAAAACATTACGAGTTGTAGCTGAATTCATATAACCAATAGAAGCAGCATTAAAATCTATTTAATGCAATAGACACAACATTGCTCTAATACATCTGTGCTGCTGTGAAGCCTGGATCACCAGGCTAAGAATAGTCTCTGTCACTTAATCACTATAAGGTGGGGAATGCTGGTGGGACAGTGTGTGCCTGGGACAGAAAGGATATTTGTTAGCAGCCAAGCCCAGTCCTACCAAAGGGAGTTGTTGTGACAATCCACTGAGTACTTCTGGTTATGGGTTCAAGTTGTGACAATCCACTGAGTACTTCTGGTTATGGGTTCAAGTCCCTAACCAAACCAATGCCTACAGGGCGATCGTCTCAAAAACACGGTCAGAAATAGCAGCCAGTAGTACAGCTAATATGCTAGCCCACTTAGCGCCCCTGCCACAGCTGAGCATTGGATGTAAACACAACTCTAGCACTGGAACAACAGATACTGTGTCATCCTGTCATTTACTTGTATTGCTAAACAGACACAACTGCACCTAGAAGATTAAGGACAGATGTACGTGGTATAATACAAAGGTCATTGATATTATGCCAGCAAGATGAGCTCGGGAAAAATGGTCAACAAACAGTCAGATGTTAATTTTACCCATCTGTTTATCAAGGTGGTTTGAGCTCTTGTTTTGAAGCTGATCCTTATGATGTAGCTCTGCTCAGTCACCCAGTTGTAGGCTATGGGGGTTTCTTAACGTGCTTCATTAGATATTACCTAACCTTGACTGACAGCTTTTCAACCTGAGTATCTCTGTCCCTCTTAACTTGAAATCAGGTGCCATTGTAATTGAAGTACCTTGATGGAGGCACTAACTGCGGTGCTGTTTTAGAGGGACCTCTTTGAAGACAGACTCCCACCTCTTGTGACCATGTACTCAAACCTATAGTATAAGCTGAAAGGTACTTGATTAACTCACAGTAAAGCAGTTACTGAACACAAATAACAAAATATGTGCCACTAAAATTTTCAGAGAAGACTTTCTTATGCTATCCATTCAGCCTACTCAGGGTCATATAGTTTCATATATATGCGTACTACACATTATCCAACTATCACATACTATATATTAATCAGATGTTTAATATTATGTATCTCTACAGTATTAATAATTATGTAAAGATGTTGCAAGATACTGTGGGTGAGTTTTTGCATACTAGCCAGATAATGTTATATGAGAATATTATCTTAACCTATTCTCTTGTTATGCTTTGAAGACCCTTAAATTGGACAATTTTCTGGCATTGTATGATTGACATGGTCATTTCTGGTAGAGGCTATTGGACCTCTGGCTCTTCTGTTTAAAGACTTATCATTTTTTCCAGGTGAAGAAAATGTATCATTTTGGACCAAGCAATGAATTACTTCAAATATGCAAAGAGTAACGTGCGTAGTCTCCTATGATACTCAAAAAGGGAATCAGCTGAGTAATTGTTATTTGTATCTATATGTAAAAGTATTGTGTCTTTGTTGTAGTCATTTCTCGTGATGTTCTGTGTTTACCTACTGTACTTCTGTGTTACTTACTATATTAAGAATACTTCAATGTCTCAACTCACTGCATATTGTTGGGTCAAGTACAAATGCATTAATCTGTAATGACAGTCTTTTGTCAGAATCTCTCTCCTATGCTCTCAAATGTCTTCCTGTTCATCCACTGTACCTGTAGCTGTCAACTGTATTCACAACCTTATAAAGATCCAAGACAAGAAGTGTGATGATGCTGTGTTTTCTAGGAAAGGGGCACTCAAGACACAAATAAAAGGAAGTTGAAACATCTCAATATCTGAATTGATGCTTTACAACAGCCCTCCTTGCGATTTTGTGTTTTCTGTTCCTCTGTGATGTGAGCCTGAATATCAGGCTTTGCTGAGCCAAATGGCATGCCACTCCACTGTCTTCTGTTTCTATAATACCCTAATGACATGCACTGTGGTCACTGGGGGATGAAATGCTAGAGCTCACAGATCACTGAGGTGGAAACTCAGCTTGATCGGGAAGCAGTGTGTATTGCACTCATCTGTGCATTTACTTTCTTCAGGCACTGTTTGATGCAAGCTCTTTATTCTTCCTATGTGCACACCATCACGTCCCATATGTCATTTACAGGTAACTCAATAACAGGTAGACTGAAGGAAGGacagtgtgtttctgtgtgcatTTGTGTTTATCACCAATCTGAACTACTGTACTCAATGTCATTATGAATTAAGTGTCAATCTCTGCAGAAGAAAGTGTAAATTAAGACTTCTACTAGGTTAATCAAGAGGACTGGAGAGGGATGTTCAAAAACCCTGTtcgtcccaaaaggcaccctattccttatatagtacactactttggaccagggtccatagggctctggccagggaatagggtgccattgggatgCAATCCCTGATTCAGTCACGCCAGATGTCTTCTATTACTATATTGACCCTCACCAGCAGCAAAACCATCCAGGTTTTTGTGATGAAGTGACAAGTACGATTAAACTGGGTGATTTAAAGAAGCAGATGTTCTGAATGAACAACAATACATTGGTATCCCCCTCTCTGTAAAAAGGACTGGATCATACAGGGTTTATAGTGGATAGATGCTAAGATTACTGCACATGAATGAATGCATGATCTTTTCACTGCAAGAGGTCTATGGCCTTGctgtaacatactgtacaatATGTATTATCGTCACATATAGGTGGTAAAAATTATACAGTTCCATCTTGTAGATATTCAAGCATAGTTTATAATTATAACTGTTTGATCTGCAGAGGAAATGTAAAAACGACCTGAATCCATCTAAGATGACGTGGTTAATGCCAGTCAGTGGCTGCTGATGATGAATGATTGgcatgtggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715262 lncRNA downstream 41578 58837838 ~ 58848423 (-) False G629056
TU715265 lncRNA downstream 41578 58837838 ~ 58848423 (-) False G629056
TU715266 lncRNA downstream 41578 58837838 ~ 58848423 (-) False G629056
TU715267 lncRNA downstream 41578 58837838 ~ 58848423 (-) False G629056
TU715268 lncRNA downstream 41578 58837838 ~ 58848423 (-) False G629056
TU715374 lncRNA upstream 12436 58908234 ~ 58908581 (-) True G629152
TU715417 lncRNA upstream 28552 58924350 ~ 58924635 (-) True G629185
TU715422 lncRNA upstream 30160 58925958 ~ 58932436 (-) True G629187
TU715425 lncRNA upstream 39320 58935118 ~ 58935510 (-) True G629190
TU715428 lncRNA upstream 43017 58938815 ~ 58939103 (-) True G629193
LOC110528983 mRNA downstream 21785 58846467 ~ 58868216 (-) True LOC110528983
XM_036983641.1 mRNA downstream 44633 58843679 ~ 58845368 (-) True LOC118965303
XM_021608245.2 mRNA downstream 176371 58708278 ~ 58713630 (-) False sfrs3
XM_021608246.2 mRNA downstream 176373 58708278 ~ 58713628 (-) False sfrs3
NM_001165202.1 mRNA downstream 176455 58708333 ~ 58713546 (-) False sfrs3
XM_021609901.2 mRNA upstream 52658 58948456 ~ 58964243 (-) False LOC110528094
XM_036983651.1 mRNA upstream 52658 58948456 ~ 58970820 (-) True LOC110528094
XM_036983647.1 mRNA upstream 126896 59022694 ~ 59030791 (-) False eps8l3a
XM_036983645.1 mRNA upstream 126896 59022694 ~ 59035060 (-) False eps8l3a
XM_021609907.2 mRNA upstream 126896 59022694 ~ 59035072 (-) False eps8l3a
TU715243 other downstream 176427 58707572 ~ 58713574 (-) False sfrs3
TU716471 other upstream 851652 59747450 ~ 59752591 (-) True G630132
TU716577 other upstream 1020181 59915979 ~ 59917551 (-) False G630227
TU716578 other upstream 1020181 59915979 ~ 59917551 (-) False G630227
TU716579 other upstream 1020181 59915979 ~ 59917551 (-) True G630227
TU717152 other upstream 1187248 60083046 ~ 60083857 (-) True G630747

Expression Profile

XM_021609897.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

XM_021609897.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021609897.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.