RNA id: XM_036983643.1


Basic Information

Item Value
RNA id XM_036983643.1
length 6600
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110528095
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58969726 ~ 59022859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGTGTCACAGCTGCTCCTCCCTGCTGGCTGTTCtgcagctctgtctcactctgctcCGACTGTCACAGGAGCACAGGCAGCAAGATGTCATCCTCCTCATCCAGCGAGGGCCAAGGGAAGCCCAAGCCCAAATCCCCACTGCACAAGAGAGGGAGTCTGCAGAATACCACCAGCCTTGatctGCGTGGTGTAGCAGAGCAGGCCAAGACCCTGAAGCCTCAGCGCTCCCTCCCTGGGACGCCCGTCACTAACCTACTCAAACACTTCCCCATCGACCTGCGTACATCCATGGACGGAAAGTACAAGGAGATTGCAGAGGAGCTGTTCACTCGCAGCCTGACGGAGAGTGAGATGCGCACCGCTCCTTATGAGTTCCCTGAGGACAGCCCCATCGAGCAGCTGGAAGAGAGACGCCAACGCCTGGAGAGGCAGATCAGCCAGGACATCAAGCTTGAGCCAGAGATCCTGCTCCGCGCCAAGCAGGAGTTCATGAAAATCGACAGTGATGCCGACCTGGAgTTGATGAATCAGGAGGGTGGTGTGGACAGGACCGATGATGGCTGGATGAAGGAGAGAGTATTACCGATGGAGCGAGAGTACCAGCGTGTGTCAATATCAGGGGAGGAGAAGTGTGGGGTGCCCTTCACAGACCTGGTGGATGCAGCTAAGTGTGTGGTGAAGGCCCTGTTCATCAGGGAGAAGTACATCGCTCTGTCCATGCAGAACTTCTGTAAGACCACTGCCCGTGAGCTGGGGGAGCTGGGAGAGAAACCCCTGGACCTACGCATCTATGAGGAGATCCCTGAGACCCCCGTTGATGcagATGCTCCAGTCCACCCCCCTGTCTCAGAGACTCACCCCTATGAAAACCAGGTCACCAAGAACATGCCTGCAGACACAGGGTACAGCTGTAAGATGGTGGATGGGGTCATGCATGTCTACACCAAGAAGAGCCCCATGGAGAaGAGTACAGAGTTGGACCTGCCCTACCCAGACCTGAAGGAGTACATCGCTGACATGAATGTCATGATGGCTCTCATCATCAACGGACCAGTGAAGTCGTTCTGCTACCGCCGGCTGCAGTACCTGAGCTCTAAGTTCCAGATGCACATTCTGCTGAACGAGATGAAGGAGTTGGCAGCCCAGAAGCAGGTTCCTCACCGTGACTTTTACAACATTCGCAAGgtGGACACCCACATCCACGCTTCGTCCTGTATGAACCAGAAGCACCTTCTGCGCTTTATCAAGCGGGCCATGAAGAAGTACCCTGGGGAGATAGTCCACATGGAGCACGGGCGGGGACAGACCCTCATGGAGGTGTTTGAGAACATGAACCTGACCGCCTTCGACCTGAGTGTGGACACACTGGACATGCACgcgGACCGCAACACGTTCCATCGCTTCGACAAGTTCAACGCCAAATACAACCCCATCGGAGAATCCATCCTGAGAGAGATCTTCATCAAGACAGACAACCACATCGAGGGCAAATACTTTGGCCACATGATCAAGGAGGTGATGGCTGACCTAGAGGAGAGTAAGTACCAGAACGTGGAGCTGCGTCTGTCCATCTACGGCCGCTCCCGGGACGAGTGGGACAAGCTGGCCCAGTGGGCCGTCAAACACCAAGTCTACTCTGACAACGTGCGCTGGCTCATCCAAGTGCCCCGCCTCTTTGATGTGTACCGAACCAAGAAGCAGCTGGCTAACTTCCAGGAGATGATGGAGAACATCTTTATGCCTCTGTTTGAGGTCACCATCAACCCCCGCAGCCACCCTGAGCTGCACCTCTTCCTGCAGCACGTGGTGGGCTTTGACAGCGTGGATGACGAGTCCAAGCCGGAGCACCACATCTTCAACATGGACAGCCCCCTGCCAGCCGACTGGACAGAGGAGGACAACCCTCCCTACtcctactacctctactacaccTACGCCAACATGACCGTGCTCAACCATCTGCGCAGGAGGCGTGGTTTCCACACGCTTGTGCTGCGCCCTCATTGCGGGGAGGCGGGGCCTGTCCACCACCTGGTGTCTGGTTTCATTCTGTCAGAGAACATCTCCCATGGGCTGCTGCTCAGGAAGGCCCCAGTGCTGCAGTATCTCTACTACCTGGCTCAGATTGGCATCGCCATGTCCCCCCTGAGCAACAACAGCCTGTTCCTCAGCTACCACCGCAACCCCCTGCCTGAGTATCTGGCCAGAGGCCTCATGGTCTCTCTGTCCACTGACGACCCCCTACAGTTCCACTTCACCAAGGAGCCCCTGATGGAGGAGTACAGCATCGCCACACAGGTGTGGAAGCTGAGCTCCTGTGACATGTGTGAGCTGGCCAGGAACAGTGTCCTCATGAGCGGCTTCTCCCACAAGGCAAAGAGCTACTGGCTGGGGCCCAAATACAGCAAGGAGGGCCCTGAGAGCAACGACATCCGTCGCACCAACGTCCCGGACATCCGCGTGGCATACCGCAGTGAGACCCTGCTGGAGGAGCTCAACCTCATCACCCATGCTGTGCACACCAAGGAGCTGGACAACATCGACGAGGAAGACACCCTCTCCATGGCCCCCTTTGGGGCAGAAGGACACTAAATCAACAACCCCACCCCGACTTCTAACCCCCCCTCGGCCCCTCCCTGCATGACACTGAGGGGGTGCAGTATGAGTGGACTCCAGCTTGTTGTTTAACCTCTACCTCTTACCCCCTTATCTCCCTCCCACTAGGGAATTGGACTGTGCACTCGTCTCTCAGCTCTCTTGTACTAAAGCCAAGGATACAATGCTCCCTGAGTGGCCCCATCTCTCTGTCCGTGATGGGGGTGGTCAGTATGGACTCATGTTCCAgtccccccttctccctcaacCCAGGTTCCCTCTTCAACTCTCTCTGGGTAGCCCCTGTTTTTCCTTTCTACTTCTTTTgactcctccctatctctctaatGCTGACTGTGAGATTTCAATCAGCACGGCCAAGGTTGGCAGGGGGAACATCCAGTGCTTGGATTATTTTCTAATACACAtatgggaggagagagactgtagcCTAAAGTCTTTTTTTTCACCTCATCTGTTCTTCGATCAGTTCCTGGATCACTTTCTCTGTCACTTTGATCTCCTGACCCTTCAAACCAATACTTCTGCCCTTTGCTTTGTCATGTGACCTTGCACGAGAAAAAGGGTCCCACAGTTCAGCCTGTGATTTGTTGGCATGTTTGTACCCATCacctatattacacacacacacacacacacatacacacactgcacagtTTAGCCGTCCTGAAAACTGCTCCTCTTCCATCACAGTCGTTCTGCCTGAAGCTCATCTAGTTTAATATCTTCACAATGAAGTAGGGAAGCAGATACAACTTAACATAAATATTATGAGGGCGTTGTCCATGGGTCGCCTAACCTACACAACATGGACACACCTAAGCAATGCATAGGTGAATGTTCCACCCCACATTGTTCCAACACCCGTTGCGCACTGATAGGAACAGTCACATGTAACTTAGAGTTTCATGGAAACCGCGGTAACAAACTTCTAATGTATGGACGTACACAGTTAAGAAAAATTGAGAAAGGACCAAATCTGTGTGGCCTAGAAGCAGAAGTCGTGCACAATTCCAGTCTGTCTGCTGCTGGGTATCTGATGGCTTTCATCCTTCTCTGTGCTTCTGGAAGGTTGTAGGGATTTATTGGCTAAATGAGTCCTCTCGGCCGGTCTCCCTGATCTAAGTCAGCTCTGAATGAAATAGCAGGCAGGACATTCAGCAGAGAAACGGCAGCAGCCGTCTGGGCATGGAGCTGTGTACCTGACTGGTCTAGTGCAAACATTCCATTAAAGTAATATTAAGAtcaatgttatttttatttaacaaatCACATTAGTTATAGAATATGCAGACAAAAATAGTAGATTTATACTATTCCATGGTGTGTACAATTTACTAAATATCTAAAAAGGATATAGATACATGTGTGTATATCTAAAGAagaggtacgtgtgtgtgtgtgtgtgtgtgtatatctaaaGAAAATATATCAGTCTGGTAGTGGATGCTTAGAGGTGTGTATGATAAGAGATGTTAAACCACAGCTTTGTTTTCCAAGCACAAGTCAAGAAGAATGTCAGGGAggctcccctgtccccctacaatTACCTcaacactcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgctcccACACACCCCTTGGAGACCAGGACAGACCCCGGGGACTGACCTCTGGGCCCACTATGTTAGTTATTGCATGCAGTGCCCTGTATGCACCAAACCAGACTTACCAGGTGAAGGCCTTACCACTGCTAGCCTGTCACTCTCCGTTTTCATGCCCTGCTGCAACGCCTCACTCCTCATCAACCATAACCATAACACCTGTCCTCTTCAAGCTTAAGCATTTTTGCTGTCCTAACATCAAGGAACTGATACCAGGCTGTGTGCTGTATGTTAAAGTACTTTATCCTTTATCTACCCAGGCCTTCCAGTGAAGTGGAAGAAGCGTTTTAGCAATGCTCTGCTTTGCCTGCATTTCCACCGTGCATCTGATGTTGTGCATGTCTGCATGGACCACTGTGTGGCCATGGGAGTGTCTGGGAAGATGGTTAAAGTGCTCTGTAATGTGAAAAAGCAACACATGACAATCCAAGGAAGCTGAACAACTGTCATGTATGAAGTATGTGTGCAGTCAATGATTGTTGTTAGTTTGAGTTCTGCAAAACAAACTCAAATCCAGCTCATCACTATGGCAACGCTCAAACCATGGAGAGACAAAGTTGCTTGGTTGTTATCAGCATCAAATGAACTCACCCCCATCAGTCATGGTTTTCGTGGTCACCAAAACAGATGTGATCTGTACCATAGGGATCCTattgtaattcctaattctatgttCTGTAAATTCACCCCCATGTCACCCAACGAGCCTTCTCCTCATCGGACCTCTTCTGTGATTCAAACTGTGGGAGTTCTATTTGTACAGTCCTATTATTTGCCAAGACTGTTAACTACTGGGCCCTAGTTGTAAAATGTTCACCACGCATTGCGTACCGTTACCTACCAGCCCATTTTAAAAACCTAAGTGTGACAAAAGCCACACAAAATATACGAGTAAATGTTTGAGAAACCAGATCATTTAGGACAAGCTGAACATGTGGATGGATTTAATatataaagtgtatttttttaaagGCTATGGAAATAAAAGGTTTATATTATAAACAGTATATCAATATCTAGATCACAAACTTGAAGTTTCGTTGCTGTAGATCATTTTAAACTGCCCTTATTTAAGCAGAAAGGTGTATTTTGTCATATTATTATTGGCCTTGTCTTTCACTAGATTTACAATTGGACTCAATATTTCCATGTATATTCTTTTATTATTTAGTATTTTAATCGTTTTTCTGGTGTTCTTGTTGTGTTAGGACTGTTGAAGTGTTCCATGTAGCTCTCTCTCAGTAGAATATTGAGTGATGTTGATCAAGTTAGCTAGGGTTATTTGGAGGGGCCTTCATCAATGGTAGGACCCAGAGCCATAATGGGTATCCCCTCTGACATTTAACTCAGCCAGAGCTGCCTATGTGATCTGGCTGTACATTGACACCTAAACACCCACTCAAACACTGTAATCCTTCCCACAGACATACAGCCATAGACTGGAACACTGTTTCTCTTTGATTGATCCAAAGAGGGCTTTAAAAAACAAGCAACCGTTTAGTACAACTTTTGATTTGATTCTTTGAAATCGTATGTTGCAGGGAATTAGAGGATGCATGAATGATTTGAAGGATTTGTGTCTCGTCGTGTGGAGTAGGATGTGTGTAGTTACTTGATAAACGATCAGACATCCAGGTGTGGCTCACTGAAGGACCCAACAACTTCGTTGACCTTTACCCTTTCAGTTCCGTCCGCCCATTTCAGACCTCACTAACTCCTGTTGTTGGTCTCCATCTGTAAAATGAGTTGAGTTTCTTTGCTTGTTTATAAACTACAATGCTAGCGAACCTGTTGGTTCTACTGGTACCATAGACCATACTTTATCAAACTTCACTAAGGACTGCCATATGTATTTCTGTTCCAATCGAAAGAGCACACAAACAAAGTTGGAAGACATAAGTCAAATGCTGTTTGTTTTCTTGCACTGTGTTCAGTAGTGCAAAGAGTCTTGGGCAGTAGTGATATACAGTGTGTTGTCATCACAGAACACAAACCATATAATCAGTCAATTATCACACTGCgagttttgttttttgttcaatTGATTTTCTCATTGCAAAATCACATAGTATTATTTTCACTTCATTATGTTTAATACAAAGAGTTTGACTTGTTTTGTgcctccattcattcattcattcattgtttTAGACATTTGAATGTTTTTCCATGAAAGGTTCTCTGCACGTGTTTTATTATTGACATGGTTGTCTTTCATTTGTTTAAGTCTATTGGAGTCACTATCATGACTTTAAATGAATGCCAATGTTTTACATTTACTCAACTGCTTCTGATATGGTACATGTGTAACGTCTGAAAAATGAAATAAAGCATGCTTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715437 lncRNA upstream 29463 58948450 ~ 58952778 (+) False G629201
TU715439 lncRNA upstream 29463 58948450 ~ 58952778 (+) True G629201
TU715436 lncRNA upstream 32424 58948450 ~ 58949817 (+) False G629201
TU715438 lncRNA upstream 32424 58948450 ~ 58949817 (+) False G629201
TU715435 lncRNA upstream 34304 58947719 ~ 58947937 (+) True G629200
TU715587 lncRNA downstream 27442 59050301 ~ 59050520 (+) True G629314
TU715592 lncRNA downstream 31722 59054581 ~ 59055253 (+) True G629319
TU715630 lncRNA downstream 81544 59104403 ~ 59104626 (+) True G629355
TU715631 lncRNA downstream 82537 59105396 ~ 59105630 (+) True G629356
TU715634 lncRNA downstream 87975 59110834 ~ 59111043 (+) True G629359
XM_021609900.2 mRNA upstream 49800 58925940 ~ 58932441 (+) True LOC110528093
XM_021609899.2 mRNA upstream 61411 58915182 ~ 58920830 (+) False LOC110528092
XM_036983642.1 mRNA upstream 92530 58878933 ~ 58889711 (+) False LOC110528091
XM_021609898.2 mRNA upstream 92530 58884506 ~ 58889711 (+) True LOC110528091
XM_036983640.1 mRNA upstream 140922 58835280 ~ 58841319 (+) True LOC110528089
XM_021609912.2 mRNA downstream 12214 59035073 ~ 59042858 (+) False LOC110528097
XM_021609913.2 mRNA downstream 12214 59035073 ~ 59042858 (+) False LOC110528097
XM_036983648.1 mRNA downstream 12214 59035073 ~ 59042858 (+) False LOC110528097
XM_021609914.2 mRNA downstream 12621 59035480 ~ 59041092 (+) False LOC110528097
XM_021609910.2 mRNA downstream 12621 59035480 ~ 59042858 (+) True LOC110528097
TU714554 other upstream 268657 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 268657 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 478164 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 990369 57918034 ~ 57991872 (+) False LOC110528055
TU712999 other upstream 1386190 57579050 ~ 57596051 (+) True G627035
TU715602 other downstream 45811 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 661472 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 662013 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 683094 59705953 ~ 59708053 (+) False LOC110528122
TU716553 other downstream 890681 59913540 ~ 59917551 (+) False G630206

Expression Profile