RNA id: XM_036983647.1


Basic Information

Item Value
RNA id XM_036983647.1
length 2440
RNA type mRNA
GC content 0.47
exon number 16
gene id eps8l3a
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59022694 ~ 59037726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcgcagagagcatcatgaagaacaaggaacacaccaggcagGAGGAGCTGGAGTCACTGCCTCTGAGCAGCATTGTGGAGCTGAAGGCTGTGATGGACAGCTGTGTGTACAACTCCCTGCTGACCGCGACCGTCAAGGACCGCAGCAAGAGGACCACCAGTGTCTTCATGTTCCAGTGTGAGGACCTCCGGGCCGATTTCATTAAACGGGACCTAGAGAGAGCACTCCCTCACCAGAGAGATGACTTTAGCAATCACAGCAACAACAGcAGGGTCAATCTAGAAGTTATGTCTGGCCATCAAATTGTTAGGAATCATCAGAAAACTGGCCCACCCCCTGAGCAGAGAGAATGGACTCCTCCAGAAGAACCCTCAGCTCAATGGTGCGCACCGGACTATGATGAAGATCCTACACCTACACCTACGCCGCCCATGCCCAGAGAAGAGCCCTCCCCTCACAGGAAGGAAACCTCAGTCCAACCCCTCTTTATGGGGGACAAGCCCGCGACAGCCCCTGTCTCTCATCCACGCCCATACGCAGAGACTGATAGGAATGTGGACATCTTGAATCATATTTTCAATGATATTGAGATGTTTATGGGCCAAGTCGCTGCTATAGCAGCCAAAGCCGAgatgaaaaaaaagaaaaaaaagaagaagaacaaGGATAAAGGCATTGACGGCATGCCACCAGCAGAGGAGTTTAAAACCTGTCTCCACAAAATCAAATACGGGTTCAACCTTCTGGGGGAGCTCAATGGAAAGATTAATAATCCCAGCGCTCCGGAATTCGTCCACTGCCTCTTCTCCACCCTGGCATTTgtGGTATCCCACTGCCCTGAGGAGCTGCCCCCCACCATCGTGGCGCCCCTGCTGGAGCCTGAGTGTATCCGTCTGCTGAGTGAGGAAGCCACCCCTGAGGAGGACCAGCTGTGGCAGTCACTGGGAGACGCTTGGAACATCCCCAGTACAAAATGGCCCGAGGATGATGAGGACATCCCTACCTACACTCTGGAGTTCTACGATGGTTGGCAGCCCCCAGAGGTGACCCACTCTCCCCCAGGGAGAGAGCCAGCGAAGAGAGAACCTGAGAGGAGGCAGCAGAGTCAGAATCAGAGTCAGAGTCCATTCTCCACCCCTGAAAAGAGTTCGGCCCAATGGAAGCCTTCACCATCACGTCCAGAGGAGCCAAACTCCAGTTACATGCGTGTGATGTATGACTTCACTGCAAGGAACAACAGAGAGCTGAGCATCTCCAAGGGAGAAGTGGTTCAGCTACTGGACATGTCCAAGAAATGGTGGAAAGTAAGGAGCGACAGAGGAGAGCAGGGCTTTGTGCCCAACAACATACTGGAGTCAGTGGACAAAGAGCAGGAAAAGCAGGAAACCAGTGGTCCTCCCTCCCTAACCAAGAGGTCCAAGCCTGACCAAGTGAAGGCCTGGCTGGAGCACAAGGGCTTCAGTAAAATcacgGTGCGCTGTCTGGGTGTGCTGAGTGGCTCCATGCTCCTGGGGATGACAAGAGAGGAGCTGAAGATTGTGTGTCCTGAGGAGGGGGGGCGGGTCTTCTTCCAGCTCCAGAACATCAAGTCTGCCATGGCTCTTGCCAGTGAGGTAAGGCCCATAGAGCCTTAGGACGGGAGAAGACAAGATGACCAGAGAGTCACAGACGAGTCGGGACATGAAGTTTCAACCCTTGAGCTTCAAGCTACAAATTTCCGCTGTGCAGTAGAGAAAATAGTGATTATATACACTGAAAACAGAGCAAGCAGAGTTGAGTTAGAAGTATGTAGGGCGGACGTATCAAAGCTCTAGTGTTAGAAACATTTAGTAAAAATACTATTTGTGCATTTGATAAGATCCAATACTTAAAGACAgattctctctatatatattctgtATCAACTGTTTTAACTTAAATGTGTTTAGCATATGTATTGTATCAAACCAGTGTTGATGCCACTTGATTCTATGATTGATCTTGATTAATTTATTCAAGTCACCATTTTATACATGTAGAAATTTGTTAAGTGTTATAATACTTTATGTATCTTGTTTTTGATGTATCTGAAATGTAATAAATtgatatacattttattttggtaGTGATATGTATGGACATGTAAGTCCGTCTGTATCTCTGTAAACTAATCATGTATCTCAATGTTGGCTCTGTCTATCCATATGAATCACTTGTATTATTTGACTTAAGTAAATTAGCTGAATGACACCAGCCAACAACTGAATGAATGATGTAGGACACAACACGTTAGATGAATAAGCATGCTTTATTTCATTTTTCAGACGTTACACATGTACCATATCAGAAGCAGTTGAGTAAATGTAAAACATTGGCATTCATTTAAAGTCATGATAGTGACTCCAATAGACTTAAACAAATGAAAGACAACCATGTCAATAATAAAACACGTGCAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU715580 lncRNA downstream 8021 59012582 ~ 59014673 (-) True G629307
TU715525 lncRNA downstream 61933 58959423 ~ 58960761 (-) True G629264
TU715432 lncRNA downstream 80530 58941944 ~ 58942164 (-) True G629197
TU715428 lncRNA downstream 83591 58938815 ~ 58939103 (-) True G629193
TU715425 lncRNA downstream 87184 58935118 ~ 58935510 (-) True G629190
TU715586 lncRNA upstream 18786 59049577 ~ 59049803 (-) True G629313
TU716055 lncRNA upstream 27902 59058693 ~ 59079816 (-) True G629742
TU716091 lncRNA upstream 74311 59105102 ~ 59105380 (-) True G629777
TU716096 lncRNA upstream 85691 59116482 ~ 59118091 (-) False LOC110528101
TU716095 lncRNA upstream 85933 59116724 ~ 59118437 (-) True LOC110528101
XM_036983651.1 mRNA downstream 51874 58948456 ~ 58970820 (-) True LOC110528094
XM_021609901.2 mRNA downstream 58451 58948456 ~ 58964243 (-) False LOC110528094
XM_021609897.2 mRNA downstream 126896 58890001 ~ 58895798 (-) False LOC110528090
LOC110528983 mRNA downstream 154478 58846467 ~ 58868216 (-) True LOC110528983
XM_036983641.1 mRNA downstream 177326 58843679 ~ 58845368 (-) True LOC118965303
XM_036983650.1 mRNA upstream 12480 59043271 ~ 59047285 (-) False LOC110528098
XM_036983649.1 mRNA upstream 12480 59043271 ~ 59047423 (-) False LOC110528098
XM_021609915.2 mRNA upstream 12480 59043271 ~ 59047897 (-) True LOC110528098
XM_021609918.2 mRNA upstream 54311 59085102 ~ 59094461 (-) True LOC110528100
LOC110527129 mRNA upstream 68484 59099275 ~ 59105032 (-) True LOC110527129
TU715243 other downstream 309120 58707572 ~ 58713574 (-) False sfrs3
TU716471 other upstream 716659 59747450 ~ 59752591 (-) True G630132
TU716577 other upstream 885188 59915979 ~ 59917551 (-) False G630227
TU716578 other upstream 885188 59915979 ~ 59917551 (-) False G630227
TU716579 other upstream 885188 59915979 ~ 59917551 (-) True G630227
TU717152 other upstream 1052255 60083046 ~ 60083857 (-) True G630747

Expression Profile

XM_036983647.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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XM_036983647.1 Expression in each Bioproject

Bar chart with 17 bars.
XM_036983647.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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