RNA id: XM_021609910.2


Basic Information

Item Value
RNA id XM_021609910.2
length 1741
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110528097
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59035073 ~ 59042858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGTGTGAACATGAGCAGTGTGGTTTCTCTCATTTCCTGTTCTGAGAGTGGGTATGTGACAGTTACTGAATTcaaagacaacagaggaggagaaacgaTAGAGGAGACATCAGGCTGCTGGGTTCTTTGAACATTTTCAGTTGAAGTTCATCCACCAAAATGGAGATCCAAAAAGACCTCAGGATGAGACGACCTCAGATGGAGAGTTACGACCAAAAGCTGGAACAACGGGCAGCAAAACATGAGTTCTTGAGAGATCGCAACAATGTGACGACATGTCGCAGCCCAGGACACAAGCTGGAGGCAGACTGGAAGAGTGAGATGCAGCAGAAAAGACAGATAGAGTTCCAGAGAAGGAGACAGATTGTCCAGGCTGCCACTTTTCAGGCTGATGAAAAGCAGTCAAACAAGGAGACCAAAGTCACGATGAGGACCAACAGGCAGAGAGTGCCTCTCATACACAGACAGTCCCTCATATCAGCAGAGGATCTGGGGATCACCTGGCCAGATGTACACTCCATCGGGAAGGCGACATGGATCACCTCACCACCACTGCATGGGGCAGGAGGGCAAAACAAAATAGGGCAGCTCCACTCTGACGTCTCACAGATATTCCCTCAAACACCACAGCAGCCCTCACTGAGGAAGAGTATGGATATCAGAGATAAAGTAGTTACACAGGACCAGAGTGGCCTAGTAATGTTAACCAGACAGCTCCAACAAAGGAATGCCTGCTGTCAGACAGAGCATGGCTATAGCACTGTGAAGGAGACAGACCTTGTTCAACTCTCTGAGTATCTACAGGAGGCTCTGCGGCGAGAGGATTCTCTGAAACAGAAGCTGTCTCTACTGAAGCACaccacctctactctactgctctcaCATGACAATGTCTGGAAGGTCTGTTGCAAAGAGGACAAGATGAAGGGAAAGATTGGGGCACTAGAGTCACAGCTGAAGATCTGTGTGCAGagGCTGTCCAGGGACGGAGCCAAGAAGCTGCTGCTACAGTCGGAGCAGCAGAGGCAGGAGCTGGAGGAGATGGCCGTGGCCTCACTCCAGAGGGTCACTGACCAAAAAAACAAAGCCCAGGACAGAGCTCACAGCCTGGAAATGGCACTGCAGACTGCCCAGGTTGAGTCATCACAGTGCCGAGAGCgctatgaagaggagaggaggaaatgcACCCAGCTGAGGACGTCTCTGGTGCAGAACATAGACCATATAAACCTATTACAGAGCCAACTAGAGAAAATGATGGGACAGGATGCAACTCTGGAGAGTCAGCTGCTGCAGCACCGACACACTGAGGCTGAGCTCCACCTCAAGATCAACCTCCTAGAGGACAACCTCCACACCTGCAGGACACAACTAGAGACATGGAGACAGCAAGACACCATGAAACAGCAGGAGATTGTCAGAGGACAGCTACAGGACTCCATAGAGCATTCATTGGATGAGCAGTTTCAGCCAGCCATGTCACACCAGAGCAACAAGAAACAAAGCATGATGGAAGCCAATGTCAAAAGGAGAGAGAGACGTTGTCGTCCCTGGTTCATCCTGACCCTATTCGTGGTAGTCATGGTGGTGGCCATTTTGACATTGTTACTGGCCAATATCCCCACGACAAGAAATCAGCTGTGGGACCTTTACCAAGTACTACAGGAACACACAGAGAAGTACCTCTATGACATGACATTACCACAGCATTGCTATAGGCCCATATgacaaattaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715437 lncRNA upstream 82702 58948450 ~ 58952778 (+) False G629201
TU715439 lncRNA upstream 82702 58948450 ~ 58952778 (+) True G629201
TU715436 lncRNA upstream 85663 58948450 ~ 58949817 (+) False G629201
TU715438 lncRNA upstream 85663 58948450 ~ 58949817 (+) False G629201
TU715435 lncRNA upstream 87543 58947719 ~ 58947937 (+) True G629200
TU715587 lncRNA downstream 7443 59050301 ~ 59050520 (+) True G629314
TU715592 lncRNA downstream 11723 59054581 ~ 59055253 (+) True G629319
TU715630 lncRNA downstream 61545 59104403 ~ 59104626 (+) True G629355
TU715631 lncRNA downstream 62538 59105396 ~ 59105630 (+) True G629356
TU715634 lncRNA downstream 67976 59110834 ~ 59111043 (+) True G629359
XM_021609903.2 mRNA upstream 12621 58969726 ~ 59022859 (+) False LOC110528095
XM_036983643.1 mRNA upstream 12621 58982241 ~ 59022859 (+) False LOC110528095
XM_036983644.1 mRNA upstream 12621 58982241 ~ 59022859 (+) False LOC110528095
XM_021609905.2 mRNA upstream 12621 59004398 ~ 59022859 (+) False LOC110528095
XM_021609900.2 mRNA upstream 103039 58925940 ~ 58932441 (+) True LOC110528093
XM_021609916.2 mRNA downstream 25779 59068637 ~ 59084699 (+) False LOC110528099
XM_021609917.2 mRNA downstream 26576 59069434 ~ 59084699 (+) False LOC110528099
XM_021609921.2 mRNA downstream 226804 59269662 ~ 59293823 (+) False LOC110528104
XM_036983652.1 mRNA downstream 256184 59299042 ~ 59317047 (+) False LOC110528105
XM_036983654.1 mRNA downstream 256184 59299042 ~ 59317047 (+) False LOC110528105
TU715451 other upstream 12633 59018345 ~ 59022847 (+) True LOC110528095
TU714554 other upstream 321896 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 321896 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 531403 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 1043608 57918034 ~ 57991872 (+) False LOC110528055
TU715602 other downstream 25812 59068670 ~ 59084729 (+) True LOC110528099
TU715988 other downstream 641473 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 642014 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 663095 59705953 ~ 59708053 (+) False LOC110528122
TU716553 other downstream 870682 59913540 ~ 59917551 (+) False G630206

Expression Profile