RNA id: XM_021609916.2


Basic Information

Item Value
RNA id XM_021609916.2
length 3573
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110528099
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59068637 ~ 59084729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGCCATTTTCTCTCTACCTCGAAGTTTTCACCGAATCAGTGAGGATTCAGTAATACACCTGTCGTTAAGACTAATTAAGGAATTAATACGTTTTTGACGACTGGCTATGGAAGCTCCTGCATAATATCACGTGTTAACGATTCATCTGTACAATAGGTCTACCAATAggacaaaaaaatgaaaaagggACCGTTGCATTTTTTGGGTCGAAAGAACCAGTCTCTCTTCGACACCAATATTAAAATCAAGAAGATGGaCAATGTTGAGCTGGTGTTGGATTCATCAGACATTCCTGAATCAGGCACTGCCAAAGTGAGGTCCAGACCCGCAGTCAAGCACTACATGTCCTCCTCTGATGTTGGGCAAGGGTTTGCTGTCCCAACCCCCAAAGTTCCTGTCCTCCCTCCTTTCAACAGTCCAAAGATCAACAGGGCAGTAAATGACGATCGGTTTTTCAATGGATCGGCTATATCTGTGCCCGATTTGGTGGATGGGGAGATATTTATTCCACCTCCCCCTACAATggcacccccaccccccccacccatgTTCATCCCTCCCCCACCAGATTTCTTGGGTGACTTGGACTCCCTTCAGCCTCCCTCCATGCCCCCTCCAAAACCTCCATCAGTGGTTCTGTCTAAAGAGTACGAGGATTTCACCTCCCTGAAACCTCCACTAATGCGCCCCCCGAAACCCCCGTCAACTTCCTCCAGTGCTTCTAGTTCATCTTTGTCCATTTCTATACCAACACCAGTCCCTGATTTTACTGAGCCCCCAAAGTTTGCCCCTCCACAGCCCCCTATAGACATGAGACAAGCTGCTCTGAAAGCCCTGAAGACCCCGCCTCCAAAGCCAACAAGGCTGTCCTCCATCCACAGCATGGACGAAGCCTCCCAGGTTCCAGCCCAAGCTTCCCCAGTACAGACCCCAACACCCTCCAGCTTCAACCCCCAGAACACAGCTAAGCTGGTCAAGCAGGAAGCGTCTCCAGGCCGGAATAACAAGTTCAGTCCTATGCTGGACAGTAACCTACGCAACCTGAAGGCCAGTGATGTCACTGGGATGAGGGGGGACGGTCCTGCCGCTTCCCCCCTGGCTCTTCTCATGGCGGCTAAAGAGCGAGGCAGGCACAGGTCCAGTCTTTCCCTTGAAAACAGCACGAAGAGTAATGAGCCATTAGCCAGCATCCAGCACAGGGAATTCAATCCCAATTCTTTCACCGTCATCCCTAGGGCCACCTCATTCACTTCTGTAACCTCACAACATAAACCACAGTCTGTGGTCCCACTGGAGGCCACAGTGGTAATCCAGATTCCAGCAAAACCCCAGATTATTGAGTCAGCGGTGAAGGGGCCAATTGCAAATCCAGTAGTTAAAAGGATTCTGCCCACCTCTAGATCCTCATCCTCCAGCAGACTAGCCATGGATAAGCAAAGTGGAGAGCAGAGGATTGATTCACCCTCTAGCCTTTTCAGGGATGACGAGAACCTATGCATGCCATTACTCCCTCCCCCTCCCGAATTCGATGACCATGATGTCGTGGACTCTCCTCCCAGCTCACCTCCACCTGACCCTCCACTGAAGAAGGTCCTGCCTCCCACTCCCAGCCCTGtccttccagtcctgtcctcTAATGCCAACCCTGTCCTTCATGTCAAAACTCCCTCGCCTCCCCCTCCAAAACCTAAATCTCCAAGCCCTCCCAAATTCCCACCTCCTGCCATGGAGATCAAACCCAAACTGCCTGTTCAGATCAAACCCAAGCCGCCTCCCACCCaggccctctcctccctctcagccAGCCAGGCCACACTCCAGAGCATCCTGCAGAAGAAGATGCTAGAGATGGACTGCAAAATGGACAACAAAATGCTGGCCATGAAGGAAACAGACTCTGATGACTGGGGTTCTCCCTTGTCTGATGAGGAgaccaagttcccagttgtcccCAGAGTCACCCCGAAAAACCCTGTTATCACTACAAAGAGCAAGAGTGCCACTGTGCCAGCCACAACACAAGGACTTGACATGAAGGAGCTGGAGACAAAAATGGCCATGAAAGGTCAGGGTTTGTCAGAGCCATCAAGAGTTCCCACAAGCAATGGGCCACGGTCAAAGCAGGCGTATGGCATGACTTTCATGGTACAACCCGGAACCAAACAACCAATCACTGTTGTCAGCAAATGAGGATCCAACTCAATTATACCacatactgtaccatacagccCCTGTCAAGAGCAAGGACAATGGAAAGAGAGCACCTTAAATACTGCTAAAAATGGATATATCCAATAAAACACTAAGCATGTATGCCAAGGATGTTTTCACCAAGCCCCTGGAGAGAATACAAGGTGCTAAGCATTTGTCTAGAAAATGTTTTGCTGTACCACAGCACATAAACCTGCCCCCCAGAGGTGGTGTCAAATAGCTTCTTGTCTAGGTGCCAAAGTCTAGAGTGAGTGGACTGTTGGAACAGCTTTCAACAGTATCTTTGACTGCTACGGTTTAATCAGTGCTAGTACACATTGCCTTATTTTTTTACCTAATAGATTCAAAGCAGATTGTGAGGCTGTAATTTGCCAGCcttaatatacactgaataatGTCATGCATCATAAGGATATTTGTATAAATGTCTTGAAGAATTACTATACAGATGTGTACAGATTGTTTTTGCTTATGTTTCCATTGTGTCACAGTACCTGTACATTCTGTATATTTTTAGAGCAATGTAGGGAATTTAACTAGTCTACTACAATACATTAAGAACAAATGTAGATTGTTCACTATATTATACTTAAGAGTGCAACAACTATGTAAACTGTTTATCTTTTGATCTTCTACTTCAGTCAGGTGAGCAAGATATGTTCCATATAATGGAAGACTAAATAGAAGCAAAACAGATGTCAGCCATTTACCACATAAGGACAGAAGTAATATGGTCTGTAGAACCTACAgtggtcagtttattaggtacaccagcCCCATTCCCTAAAATAGTTTGCTCCTATAGACAGTCAAGCGGCTGTGGTTTGTTATATAACTGAACATTAGAAATGGGCAGAATGAGTGACCTAAGCAACTATGAGCGAGGTATGATCATCGGTGACAGGTACACCGGTTCCACTATATCAGAAACAGCCAGCCTCCTGGGCATGTCATACGACAGTGTCTATGGTTTACTGAGAATAGTGCGACAAACAGatccagtcagcagcagtcctgtgggcgaagaCAGGTCGTTGAGAGGTCGGAGGAGagtggcaagaatcgtgcaagttAACAGGCAGGACACAAACCGACAAATAACggcacagtacaacagtggtgtgcaaaCAGCATCTCAGGACACACAACTAGTCTGTCCTTATAgtagcagacgaccacaccaggTTCCACTCGTATCAGCTAAAGCAGGTCCAGTGGGCACGCAATCAACAATTGAGTGGAAATTATATTTCAGATGGTGTCAATTTAATTGATTCATTTTGGAGTAGAACGTTCTTAAGTCACCAGGAGGAACCTAAACAGttcaaataaatacagtaggtatGCCCCTGCACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU715592 lncRNA upstream 13384 59054581 ~ 59055253 (+) True G629319
TU715587 lncRNA upstream 18117 59050301 ~ 59050520 (+) True G629314
TU715437 lncRNA upstream 115859 58948450 ~ 58952778 (+) False G629201
TU715439 lncRNA upstream 115859 58948450 ~ 58952778 (+) True G629201
TU715436 lncRNA upstream 118820 58948450 ~ 58949817 (+) False G629201
TU715630 lncRNA downstream 19704 59104403 ~ 59104626 (+) True G629355
TU715631 lncRNA downstream 20697 59105396 ~ 59105630 (+) True G629356
TU715634 lncRNA downstream 26135 59110834 ~ 59111043 (+) True G629359
TU715639 lncRNA downstream 31801 59116500 ~ 59117096 (+) True G629364
TU715640 lncRNA downstream 35258 59119957 ~ 59121000 (+) True G629365
XM_021609912.2 mRNA upstream 25779 59035073 ~ 59042858 (+) False LOC110528097
XM_021609913.2 mRNA upstream 25779 59035073 ~ 59042858 (+) False LOC110528097
XM_036983648.1 mRNA upstream 25779 59035073 ~ 59042858 (+) False LOC110528097
XM_021609910.2 mRNA upstream 25779 59035480 ~ 59042858 (+) True LOC110528097
XM_021609914.2 mRNA upstream 27545 59035480 ~ 59041092 (+) False LOC110528097
XM_021609921.2 mRNA downstream 184963 59269662 ~ 59293823 (+) False LOC110528104
XM_036983652.1 mRNA downstream 214343 59299042 ~ 59317047 (+) False LOC110528105
XM_036983654.1 mRNA downstream 214343 59299042 ~ 59317047 (+) False LOC110528105
XM_036983655.1 mRNA downstream 214343 59299042 ~ 59317047 (+) False LOC110528105
XM_036983656.1 mRNA downstream 214349 59299048 ~ 59317047 (+) False LOC110528105
TU715451 other upstream 45790 59018345 ~ 59022847 (+) True LOC110528095
TU714554 other upstream 355053 58708295 ~ 58713584 (+) False G628468
TU714555 other upstream 355053 58708295 ~ 58713584 (+) True G628468
TU714457 other upstream 564560 58503550 ~ 58504077 (+) True LOC110528980
TU714108 other upstream 1076765 57918034 ~ 57991872 (+) False LOC110528055
TU715988 other downstream 599632 59684331 ~ 59684763 (+) True G629678
TU715989 other downstream 600173 59684872 ~ 59685187 (+) True G629679
TU715995 other downstream 621254 59705953 ~ 59708053 (+) False LOC110528122
TU716553 other downstream 828841 59913540 ~ 59917551 (+) False G630206
TU716682 other downstream 1022372 60107071 ~ 60109290 (+) False mustn1a

Expression Profile