RNA id: XM_036983667.1


Basic Information

Item Value
RNA id XM_036983667.1
length 2878
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110528118
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59656971 ~ 59664214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCAGCTACACCGCCAGCAAGGCTAAACTAGCTATCTAGTAACGTTAGCCTACCCTAGCTAGCCAATCACAGTACTTGATGTTTGCTAGTTACATTCAAGATGATACatgagtagctagctagcaagatcAACTTGGTTCTCTGTGGTTGTGTGTCATAACTACTGGTAGCCTGCGTAACTAGTTAGCTAACATCGTTAGTTTGCTGCATCTGTTGTGTTCACATTCCAGCCAGTAACCTTAGCTAGTTAACGTTGCAGTACTAGTTTACATCATGACCTCTTAAAATACCAAATTGGAGGCCATCATTAGCTGTTGACATTGTCAAGCCCTAGTTATCATTTCAGAGATGTTAAAATGTTTTGTCTTCTACATGGCGAACTAGATTCCACTTGCTGTTGATGATGTGGATTGTAAAAAGGAGCCACTTCTAGGAGACCCAGATTATAATGTCTACACCCGGTTTATGAAGTCTCATCGGTGCTATGACTTGGTCCCTACCAGCTCCAAGTTGGTGGTGTTCGATACTTCACTACAGGTAAAGAAGGCGTTTTTCGCTCTGGTGTCCAATGGGGTGAGAGCAGCGCCACTCTGGGACAGTAAGAAGCAGTGTTTTGTAGGTATGCTGACCATCACAGACTTTATCAACATCCTCCATCGCTACTACAAGTCTCCTTTGGTGCAGATATATGAGCTGGAGGAGCACAagatagagacatggagagAAGTCTACCTTCAAGACTCCTTCAAGCCCCTCGTCAGCATATCCCCTAACGCAAGTCTGTATGATGCTGTATCGTCTCTGCTGAAGAATAAGATCCACAGACTGCCTGTGGTCGACCCTCTGACAGGGAACACCCTATACATCCTCACGCACAAGAGGATCCTGAAGTTCCTCAAGCTCTTTATATCGGAGATGGCAAAACCTGCCTTCTTAGGCCAGACTCTAGAAGAGCTTGGCATCGGAACATTCCATAAGATTGCAGTGGTGCGTTCTGACACACCCCTCTACACAGCACTGGGAATCTTTGTGGACCAGAGAGTGTCTGCCTTGCCTGTCGTCGATGACAACGgacgAGTGGTGGACATTTACTCCAAATTTGATGTCATTAACCTAGCAGCAGAGAAGATGTACAACAACCTGGATGTGACTGTGACCAAAGCTTTACAGCACCGCTCTCAGTATTTTGAGGGAGTGCTCACCTGCAACACACACGACACACTGGAGTCCATCATCAACAGACTGGTGGAGGCAGAGgtGCACAGGCTGGTGGTGGTTGATGAGCAGGAGGTGGTGAAGGGCATCGTCTCTCTCTCAGACATCCTCCAGGCACTGGTTCTCACTAATGAAGAAGCAGACTAAGGAACTGCTTGAGGGAGTGATAAAGGAAATATTCCTCCAGAAGATGAGGAAGGATAGAGAAAATGAGGATCCTGAAAGAGGAGTGatgcgagagagggaaagataagTCTTCTACATCCCCTCATGTACAAATGTACATCTACAGCACAGGAggacatctctttctctctgcatacAAATGTGAAGTCCCATTGACTTTCTCAATCCAGCAATATAGGCACGTGCAGTAACAAGGGACATACAGGAACACTGTAAATCAAGCCAAAACCCAAGCAACCAAAAAGACCCAAACAAGAAGCAGGACCAGACGTAGCCAATGGAGTGGAGCTGTATGTCCGTTCTGGGCAGTCCAACACAGCCTGGTGTCTCTCCTCTGTAAATGCAGGTGGTGGACCTATATAGTACAGGAATCATGTGTAGTTATATGAAGGGGATCAATTTGCCACTTCTCAGACAAATCCATTCCCCACCTATTCTTTCCCATTTGGTCTGTAGATACACTGGGGAGAGGAGTCAGTAACTTCCCACCCTGGCCCTAAACTGAGCAGCATTCCTTTACCCATCATCCTTATAGGTCTGGTATCTCTAAAGCACAACTAGCCAGCCAATCATGGATCGCAGGTTAAAGGATGTCACAGTGTAACTTGAAGATATACAAATCTGCAACGGCAACTCCGCTGCCTTGGTTACAGTAGGTGTGGATTGTCGGAGATGGAACTGCTGTAGAATATGTCATTTTTGAGTTTTACTCATTTATATAGTGATGCACAACCAattaatatttatgtaaatataaCAATGTTTTATTTTGGTTATTTCCGTTTCTAAAGTGCTCttaatttctttggggggggttTAGTCAGTGTGTCCTTGTTTGTCTTGACATGCATTCAGTTTGACTCTGAAGACCTGGAGAAAGTGCTCCACCGTGAACCATAACATAAGGCTGCTGTTAGGGCTTGCCTAGCCTTGTTCTTCAAAGTCATTCTAGAGCTACATGAGAAATGATTTAGCCTTTTTTAAGTTTTACTAATTTCCCAATCCCAACCATATTTCATTAGACAGTTTTCAACAACATGTAGTGTGAGTGTGGATTGATCATGATGGATTCGTTCACATTTGCTTGTGAGCCTTTTCTAGTCCTCCTTATTGGATGTTAAGTGCTTCTGAGCTATCCATCATGATTTTATTGGGGGTATATCAGTGAAGCATTAGACGTTATCTTTTTGCTGTGTCTATTCCATTTTATTTCATCCTTGTTATAGGATTCAATTTTAGCCTTTCATTACTGCCACCATTTTCTTTGTCCTTTTTACATTCCGAGGGCAAACCAATCTCGACCTATGAAAAGGACTTCTTTGGGCCATTGAGTCAGAACATTTAACATTTTACTTTTCAAAATTGACTTTTGGTATGAATAAGATGCGTACAAGTATGTAAATGCTGTCTTTTTTTCTACTACTCATGTGAAGTTCTAATTTAATGCATGAACAATAAATATGATTTCTCTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716356 lncRNA downstream 83635 59573070 ~ 59573336 (-) True G630023
TU716328 lncRNA downstream 139723 59516972 ~ 59517248 (-) True G629996
TU716327 lncRNA downstream 154817 59501878 ~ 59502154 (-) True G629995
TU716321 lncRNA downstream 158604 59498131 ~ 59498367 (-) True G629990
TU716320 lncRNA downstream 159164 59497594 ~ 59497807 (-) True G629989
TU716429 lncRNA upstream 16748 59679502 ~ 59680142 (-) True G630092
TU716430 lncRNA upstream 17390 59680144 ~ 59680456 (-) True G630093
TU716431 lncRNA upstream 18171 59680925 ~ 59681153 (-) True G630094
TU716433 lncRNA upstream 19778 59682532 ~ 59682791 (-) True G630096
TU716438 lncRNA upstream 30552 59693306 ~ 59693511 (-) True G630101
XM_021609937.2 mRNA downstream 57346 59556060 ~ 59599625 (-) True LOC110528116
XR_002474194.2 mRNA downstream 115460 59539797 ~ 59541511 (-) True LOC110528115
XM_021609932.2 mRNA downstream 140391 59504688 ~ 59516580 (-) False os9
XM_021609933.2 mRNA downstream 140391 59504688 ~ 59516580 (-) False os9
XM_036983662.1 mRNA downstream 140391 59504688 ~ 59516580 (-) True os9
XM_021609942.2 mRNA upstream 4647 59667401 ~ 59671567 (-) True LOC110528119
XR_005052619.1 mRNA upstream 9920 59672674 ~ 59694117 (-) False LOC110528120
XR_005052621.1 mRNA upstream 10669 59673423 ~ 59694118 (-) False LOC110528120
XR_005052620.1 mRNA upstream 10669 59673423 ~ 59694119 (-) False LOC110528120
XR_005052618.1 mRNA upstream 10669 59673423 ~ 59694121 (-) False LOC110528120
TU715243 other downstream 943397 58707572 ~ 58713574 (-) False sfrs3
TU716471 other upstream 84696 59747450 ~ 59752591 (-) True G630132
TU716577 other upstream 253225 59915979 ~ 59917551 (-) False G630227
TU716578 other upstream 253225 59915979 ~ 59917551 (-) False G630227
TU716579 other upstream 253225 59915979 ~ 59917551 (-) True G630227
TU717152 other upstream 420292 60083046 ~ 60083857 (-) True G630747

Expression Profile

XM_036983667.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XM_036983667.1 Expression in each Bioproject

Bar chart with 19 bars.
XM_036983667.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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