RNA id: XR_002474201.2


Basic Information

Item Value
RNA id XR_002474201.2
length 2113
RNA type mRNA
GC content 0.53
exon number 11
gene id rft1
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60075464 ~ 60101858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGTTCTGGTGACGTTGTAGTGACTTTCCATGTGTACGGAAGTTGATAGCATGAAATCTCTAAAGCTGTATGTAGTCAGGTCTGGTCATAcgatccaccagaaaagacaaatGGCACAAAAATTAGTACAGATTCATACTTCATAACGCACTTACTGTCCGTATCTGTGAGTCTGCTCCTTTTCACGGTGCAGTTTCTGGAGAAGCCTTGTCACAAGCCTCAAAGGAAgagggctagctagctagctgtacgATGAGTTCCCAAGATATGTTGAAGAATGCCTCCACTCTCGCGTCATACAATGTCTTGCTTCAGGTCATGTTTCGTGTGCTCACCTTTTTGCTGAACGCATTCACACTGCGCTTTGTGTCCAAAGAGCTGATTGGCGTTGTCAACGTCAGGTTGACACTGCTGTACTCCACGCTGGTCTTCTTGTCCAGAGAGGCCTTCAGGAGAGCCTGTTTGAGTGGCGGAACAGATCACAACTGGAGACAAGTCATCAACCTGCTATGGCTGACGTTGCCACTGGGTGTACTATGGGCATctctccttgtgtgtgtgtggctgtggctCCTGGAGGTTCCGGATCCCCTGACTATCCCCCACTACGGCCCCGCTGTGGGGCTCTTTGCCCTGGCCGCACtgcaggagctgctggctgagccTCTCTGGGTCCTGGCTCAGGCCCACATGTTTGTCAGGCTGAAGGTGGTTGCTGAGAGCCTGGCCATGGTGGCTAAGTGTGTTCTGACAGTGGTGCTGGTGGTCTCTGCTCCTCAGTGGGGGCTCTACATATTCTCTGCTGCTCAGCTGGTGTACACAGGGTTCCTGGTGCTGTGCTACTTTGTCTACTTCCTGCGTTTCCTGGGCTCTGGGGAGGCCAACAGGAAGTACTTCCCCCTGCAGTGTGTGGCAGACCTGCTGCCCTCCAGTGTTGAAGGAGAGcctGTGATTGACTGGACGTTGGCCAGGCTGACGTGGAGCTTCTTCAAGCAATCCTTTCTGAAGCAGATCCTGACGGAGGGAGAGCGTTATGTCATGACCTTCCTCAATGTGCTGAGCTTCGGGGAGCAGGGCGTGTACGACATCGTCAACAACCTGGGCTCAATGGTTGCCCGTTTCATCTTCCTGCCCATCGAGGAGAGCTTCTACGTCTTCTTTGCCAAAGTCCTGGAGAGGGGGCGGGACGTCAGGCAGCAGAAACAGGAGGAGGTTGCCATAGCAGCTGAAGTTCTGGAGTGTCTGCTGAAGCTGGTGCTTGTGATTGGTCTGATCATCACAGTGTTTGGTTACGCCTACTCCCACCTGGCTCTGGACATCTATGGGGGATCTCTACTGAGCAGTGGTGCAGGGCCCAGTCTGTTGCGATGCTACAGCTCCTATGTGCTCCTACTGGCCATTAATGGAATAACTGAGTGCTTTGTCTTTGCTGCCATGAGCAAGGAAGAGGTTGACAGGTATAACCTGGTGATGTTGGCTCTGTCTATCTCCTTCCTGCTCCTGTCTTACATGCTGACGTGGTGGGCAGGGGGCATTGGCTTCATCCTGGCTAACTGTCTGAACATGGGCCTGCGTATCCTTCACAGCCTGTTCTACATCCACCGCTACTTCCTGTTAAGCCAGTGGACGCCTCTGCGCGGCCTGAGGCCCTCCCCTCTTCTGCTGCTAGCTCTGGCTCTCAGTGCAGTCCTCACTGCTCTCTCTGAGGGTGTGTTCTGTTGTGACGGAGGATGGTTACTAAGGCTGGTTCACATCGCCGTGGGAGCCGGGTGTCTACTGGGTGTACTTGTCACTGTCCTTCTCACAGAGAcaaaacttgttcagtttgttcgGACTCAGCTCTTACCTCGCTATGGGAAGAAACACACCTAAACCTGCCCAGCAGAGGAGTAACCTGCCAActataatgagagagagagagacaggataatCCGAATGGCAGAAGGATACATAGATCTGAACACAGTGACTTGGAGGGGAATGTGGAAACAGCTGCAATCCTATGTGACCCTGTCATGGACTGAGGGTGAAGTTGGAATGAGCAGCTCACTGgccaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716718 lncRNA upstream 57545 60017644 ~ 60017919 (+) True G630348
TU716711 lncRNA upstream 68853 60006403 ~ 60006611 (+) True G630342
TU716709 lncRNA upstream 70911 60004097 ~ 60004553 (+) True G630340
TU716644 lncRNA upstream 125214 59949266 ~ 59950250 (+) True G630280
TU716643 lncRNA upstream 126385 59948859 ~ 59949079 (+) True G630279
TU716695 lncRNA downstream 13770 60115628 ~ 60116293 (+) True G630326
TU716755 lncRNA downstream 34730 60136588 ~ 60137007 (+) True G630385
TU716833 lncRNA downstream 186851 60288709 ~ 60293376 (+) True G630453
TU716881 lncRNA downstream 268073 60369931 ~ 60370320 (+) True G630500
TU716882 lncRNA downstream 269686 60371544 ~ 60421878 (+) True G630501
XM_021609956.2 mRNA upstream 313 60045927 ~ 60075151 (+) True LOC110528134
XM_021609954.2 mRNA upstream 37470 59994088 ~ 60037994 (+) False LOC110528133
XM_021609955.2 mRNA upstream 37470 59994088 ~ 60037994 (+) True LOC110528133
XR_002474200.2 mRNA upstream 128882 59937320 ~ 59946582 (+) True LOC110528132
XM_021609952.2 mRNA upstream 140971 59930706 ~ 59934493 (+) True LOC110528131
XM_021609958.2 mRNA downstream 5433 60107291 ~ 60109290 (+) False mustn1a
XM_021609959.2 mRNA downstream 18569 60120427 ~ 60144066 (+) True eefsec
XM_021609963.2 mRNA downstream 236941 60338799 ~ 60355957 (+) True LOC110528142
XM_021609965.2 mRNA downstream 278825 60380683 ~ 60391541 (+) False arpc4
XM_036983684.1 mRNA downstream 278825 60380683 ~ 60391541 (+) True arpc4
TU716553 other upstream 157913 59913540 ~ 59917551 (+) False G630206
TU715995 other upstream 367411 59705953 ~ 59708053 (+) False LOC110528122
TU715989 other upstream 390277 59684872 ~ 59685187 (+) True G629679
TU715988 other upstream 390701 59684331 ~ 59684763 (+) True G629678
TU715602 other upstream 990735 59068670 ~ 59084729 (+) True LOC110528099
TU716682 other downstream 5213 60107071 ~ 60109290 (+) False mustn1a
TU716683 other downstream 5213 60107071 ~ 60109290 (+) False mustn1a
TU716681 other downstream 5502 60107360 ~ 60109290 (+) True mustn1a
TU716696 other downstream 45959 60147817 ~ 60148381 (+) True G630327
TU716906 other downstream 367073 60468931 ~ 60483057 (+) True G630516

Expression Profile