RNA id: XM_036983676.1


Basic Information

Item Value
RNA id XM_036983676.1
length 3432
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110528987
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60084526 ~ 60102511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGTTCGTGCCATATTGGAACGaggcagaggacaggagaaagaCGGGGGTAACGTTTTAAATTTACTTGGAAGAATTAGGAAAAGGTGAGATTCACTTGGATCAAAGTGGTTTTAGCTACTGCTAATACAGTCTCCTGGGTGGTGTTGGGAACACAGTGGGGGCATCATGAACCCCGAGACACAGGAATCTGGCGGCTCTGAACTGGAGTCTGACTTCAACTGGGATGAATATCTGGAGGAGAATGGAGTATTGGCGGTTCCACATCACGCCTTCAAACATgTGGACCGTAGCCTGCAGACAGGGCTGGCTCCAGGGATGAGTTTGGAGGTGTGTGTGCGTTCGGAGCCTGACCAACCCTACTGGGTggccaccatcatcaccacctgtGGCCAACTGCTGCTGCTGCGCTACGAGGGTTACCACGACGACCGACGAGCAGACTTCTGGTGTGACATCAGGAACTCTGACCTCCACCCTCTGGGCTGGAGCAGACAGCACAGGCAACCAATGAGACCGCCTGAGGGTGTCCGTGAGAAACATGCTGACTGGGAAGCTGTCCTAGAGGAGGCTCTGGCTCAGGGAGGGAGTGCACCAGCACACCTACTGGAGGGGgcccagacagggggagacctgTTCCCCCTGGGGTGTTGTGTGGAGCTGCAGGACAGTGTAGACCCAGGGGTGGCCTGGGGGGCCCAGGTGGAGGACAACATAGGGGGCCGGCTGTGTCTGCGCTACACTGGGACGGAGGGGCTTACTCAGTCACAGACCAGGCGCTGGGTATTCTACCTGGACCCCCTCTTACACCCACCTGGCTGGGCTGAGGAAAACCGCTTCTCTCTCACCCCACCTGCTGtgctTCGTGGTTTGCGCAGCCAGACAGAGTGGGAGGAGGTGAGAAAGAACATTAGACAGCCTAAAGAAGAAGCCATCAATGAAGACTTCTTTAAggacaggccagtcctctctcctcactgctTCTCTGAGGGGATGAAGTTAGAGGCAGTGGACCCCGCTGCCCCCTTCAACACCAGCCCAGCTACTGTCACCAAGGTGCTGAGCGACCAGTACTTCAGGGTGCAGATGGACAGCCTGCAGGGAGACAGTGAAGGGGCGGGGCCTGGCTTATCCTTACTCTGTCACTATGGGAGCACCGGAATCTTCCCTGCACAATGGAGCCTTAAAAATGGGGTACCCCTCAGTCCCCCTCCAGGTTACCAGGGCCAGAACTTTGACTGGGCGGATTACCTGAAACAGTGTGGAGCGGAAGGAGCGCCAGAGAGCTGTTTCCCcgtgGGGCAGAGTGATCATGACTTTGTTGAGTCCATGAGGCTGGAGGCGGTGAATCCTGTCTCTCCTGAGCAAGTTCACGTGGCAACCGTAaccagggtcagaggtcagcacATCTGGTTGCATCTGGAAGGGTTGAAGCAGCCTCTCCCTGACATCATCACTCATGTGGACTCCCTGGACATCTTTCCAGTCAGTTGGTGTGAGAGTAATGGCTATCCCCTCCAACACCCCTACAAACCTAGAGCTCAGAGGAAGAGCCATGTGACCGTGGTGCAACCAGAAAAGCAATCTCCACTTAAAGCCACGGCCCCTGATGCAGCGAGGCAGCAGGATCTGAACCAATCGGAGAACGCAGCTCAGGGTAACGGGAAGTACAGCTGCCCAAAGATCTATTTCAACCACCGCTGTTTCTCTGGCCCCTACCTGAACAAGGGCCGTATCGCTGAGCTGCCCCAGAGCATTGGCCCTGGCAACTGTGTCCTGGTGCTGAAAGAGGTGTTGACTCTGCTGATCAGCTCGGCCTACAAGCCCAGCCAGGTGCTGAGGGAGCTGCAGCAGGACCCAGAGCTCAGGGGGCACGGCCAGGGAGAGACTCTGAAGGCCAAGTACAAAGGGAAGAGTTACCGGGCCACTGTGGGGATTGCCCGTACAGCTGACCAGGTGGCTGAGTTCTGCAGGAAGACGTGTGTGAGGCTGGAGTGCTGCCCCAACCTGATCGCACCTCACATGGTGCTGGAAGACTGCTCGGAGAACTGCTCCCTTCTCACCAAGACCAAATACACTCATTACTATGGTAAGCAGAAGACCAAGCGAATCAGCCTTCCCCTTGGTGGTTACACCAACCTGGAGAGCAGCACCAAGCAGGGGAGCAGGAGGAAGAAGAAAAAGCCCCTATTTGTCCTCAAGAAGAAACACCTGTCTACCTCTGTAGACAGCACCCCTGCTGGCTCCCCACTGGctagtggagaagaggaggacctgGATGAGGACTACTCTCTGAGTGAAGAGGACTCAGGCTCAGAGCCGCAGGATGACTATGAGGTATCAGAGAGGAAGTCccagcccccctctccctccccctgtcccaCCCCTATAGAACCTCGCCCCCGGGACAGACCCCGTCGCCAGCGCAGGAAACCCGCCCGCTCACCCTCCTACTCAGACGATGAGAACGGGCCCACCTTACCTAAGAGTGGGCGGGTGGAGGTGCAGGAGAAGCTACATCTGGACAGCAGTCCTCTGGGCTGGAGCATCACTGATGTGACCCGTTTCATCAGAACTACTGACTGTGCCCCGCTGGCACGCATATTCAGGGACCAGGAGATAGATGGCCAGGCCCTGCTGTTGCTGAGCCTGCCCACAGTACAGGAGTGTATGGGGCTGAAGCTGGGCCCTGCCATCAAACTGTGCCACCTTATAGAGAGGGTTAAACTGACATTTTACCAGCACTTTGCcagctgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttggtctCAAGCTCATTACTAAGCCATATCACATCCAGCGTTgttgtaatgtacagtatgtgctgcTCCAGGATGGACACAGCTTATAGCCTCAGCTGTTCACCCTGGAATGTGACTGGATTCTGTATCGTTCAGGGATTTTatgtttacagtgccttcagaaagtattcacaccccttgacttattatacattttgttgttacaggcTGAATTCATAACggattaaattgatttattttctcacccatttacacacaataccccataatgactaatttacataagtattttcaCCCCTTAGtcaatgttagaatcacctttggcagcgattacagctgtgagtatttctgggtaagtctctgggtaagtctaaggGTTTTCCACATTGTTCAAtatttgtaaatgtttttttattttatttgttgaactctgtcaggttggttgttgatcattgctagatagccattttcatgtcttgccataggtTTTCAGGCtcatttaagtcaaaattgtaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716718 lncRNA upstream 66655 60017644 ~ 60017919 (+) True G630348
TU716711 lncRNA upstream 77963 60006403 ~ 60006611 (+) True G630342
TU716709 lncRNA upstream 80021 60004097 ~ 60004553 (+) True G630340
TU716644 lncRNA upstream 134324 59949266 ~ 59950250 (+) True G630280
TU716643 lncRNA upstream 135495 59948859 ~ 59949079 (+) True G630279
TU716695 lncRNA downstream 13117 60115628 ~ 60116293 (+) True G630326
TU716755 lncRNA downstream 34077 60136588 ~ 60137007 (+) True G630385
TU716833 lncRNA downstream 186198 60288709 ~ 60293376 (+) True G630453
TU716881 lncRNA downstream 267420 60369931 ~ 60370320 (+) True G630500
TU716882 lncRNA downstream 269033 60371544 ~ 60421878 (+) True G630501
XM_021609957.2 mRNA upstream 1566 60075464 ~ 60083008 (+) False rft1
XM_021609956.2 mRNA upstream 9423 60045927 ~ 60075151 (+) True LOC110528134
XM_021609954.2 mRNA upstream 46580 59994088 ~ 60037994 (+) False LOC110528133
XM_021609955.2 mRNA upstream 46580 59994088 ~ 60037994 (+) True LOC110528133
XR_002474200.2 mRNA upstream 137992 59937320 ~ 59946582 (+) True LOC110528132
XM_021609958.2 mRNA downstream 4780 60107291 ~ 60109290 (+) False mustn1a
XM_021609959.2 mRNA downstream 17916 60120427 ~ 60144066 (+) True eefsec
XM_021609963.2 mRNA downstream 236288 60338799 ~ 60355957 (+) True LOC110528142
XM_021609965.2 mRNA downstream 278172 60380683 ~ 60391541 (+) False arpc4
XM_036983684.1 mRNA downstream 278172 60380683 ~ 60391541 (+) True arpc4
TU716553 other upstream 167023 59913540 ~ 59917551 (+) False G630206
TU715995 other upstream 376521 59705953 ~ 59708053 (+) False LOC110528122
TU715989 other upstream 399387 59684872 ~ 59685187 (+) True G629679
TU715988 other upstream 399811 59684331 ~ 59684763 (+) True G629678
TU715602 other upstream 999845 59068670 ~ 59084729 (+) True LOC110528099
TU716682 other downstream 4560 60107071 ~ 60109290 (+) False mustn1a
TU716683 other downstream 4560 60107071 ~ 60109290 (+) False mustn1a
TU716681 other downstream 4849 60107360 ~ 60109290 (+) True mustn1a
TU716696 other downstream 45306 60147817 ~ 60148381 (+) True G630327
TU716906 other downstream 366420 60468931 ~ 60483057 (+) True G630516

Expression Profile