RNA id: XM_021609959.2


Basic Information

Item Value
RNA id XM_021609959.2
length 2501
RNA type mRNA
GC content 0.52
exon number 7
gene id eefsec
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60120427 ~ 60144066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTAGTACATCATTTGAGATTGATTCCTGCCTTTGTGATTGCATTCCATCGCCTACACTCTCTTATCAAAAAGTTTGTTTAATAAATGTAATTCGTTTTGAGTTCTAAACGGATATTTTCTTCACACCTCATGATTTTGTAGCCTCTACTTGTGAGAGGGAGTAAAACGTTACTCACACTGGCATAATTTCCAGAGGACTGTTTTTACTGATACGCAGGAAGAAAAGTTTTGTGTAGCTCGACAGCTAACGTTTGTGTTTAGTTACCTTTATTTCATCAAACATATGAATTAATTGTAACGTAAGGAGTTTAATGTATGAGTTTATTGAATGAATATTAGTTTATCGTAAATGTTGTCAATCGTGTTGTGTCATTAACTTACTGAACGTAACTACAGTTCAAGGCACAGCCAGTAACGCTAACTGCTGAGGTTGCGAAAGGAgcagatagctagctaactaccagTCATGGCAGACTCGAGCAACAACCACCCGAAGACATTAAATTTTAATGTGGGGGTACTTGGGCATGTCGACAGCGGGAAGACATCGCTTGCCAGGGCGCTCAGCAGCACAGCGTCCACGGCTGCCTTTGACAAGAACCCCCAGTCCCGAGAGAGAGGCATCACTCTGGATCTCGGCTTCTCCTCCTTCAACGTGGACCTCCCCGAGCAGCTGCGGGAGGACCCCGGGGGCCACGGCTACGACAACCTGCAGTTCACGCTGGTGGACTGTCCTGGACACGCGTCCCTCATTCGCACCATCATTGGGGgggctCAAATCATAGACTTGATGATGCTGGTGGTAGACGTGGTGAAGGGGATCCAGACCCAGACAGCAGAGTGTCTGCTGATAGGAGAGCTGACCTGCCCCCGCATGGTGGTCATTCTCAACAAGACTGACCTGCTGCCGCCCAACAAGAGACAGACCGCCATCGACAAGATGACCAAGAGACTGCACAAGACACTGGagaacaccagATTTAAAGACTGTCCTGTGATTGCCTTGTCAGCAAAGCCTGGGGGTCCTGAGGCCCCTGAAACAGAGGAGCCCCATGGAGTGCCTGAGTTAATAGAGttGTTGAAGAGCCAGACGTACCTCCCTCACAGAGATCCGGGGGGAGCTCTGCTGATGGCTGTGGACCACTGCTTCTCCATCCGTGGTCAGGGCACAGTCATGACCGGAACCATCCTACAGGGGGCGCTGGCTGTCAATGACACTGTGGAGATCCCTGCGCTCAAGGTGACCAAGAAAGTGAAGTCAGTTCAGATGTTCCGGCGGCCGGTGACCGGGGCCATGCAGGGTGACCGGGTGGGCGTGTGTGTGACCCAGTTTGACCCTAAACTGCTAGAACGGGGGGTGGTGTGTACCCCTGGTTCCCTACACACCCTCCACGCAGCCATCATCTCTGTCAGAAAGATTGGCTACTTCAAGGGTTCCCTGGCCACCCGTGCCAAGTTCCACATCACCGTGGGACATGAGACTGTCATGGCCAGGGTCACCTTCTTCGGTCTGCCCCCTGGAGAGACCCACCAGGCCTCCACCACGGACCCCCAGCTACCCACCTCAGACCCCCACGCCTCTGAGCCAGACCTTAGACCCCTGGACACACCCTTCTCTTTTGACCGGGAGTACTTCCACCAGGATGAGTATGTGATTGGCCAACGGGAGGCCGGCGGGGCGGGACAAGACCCGGAGCAGTGGGCGCTGCTGGAGTTTGAGCATCCGGTCACATGTCCCACTCTTTGCCTAGTGATTGGCTCCAAGCTGGATACAGACATTCACGCCAACGTGTGCCGACTGGCGTTCCAGGGGCGTCTGCTGGAGGGTTTTGAGGAGAAGAGCTACTCTGAGACTACACTACTCAGACTACGTATCTACAAGACCAAACACAAGGAGGGACAGGTGGAGAGGGTGACAGACGACTACACTGTGATTGGCCGAAATCTCTTCAAGAAGGAGACCAACCTGCAGTTGTTTGTGGGGTTAAAGGTCACGCTGTCGACCGGCGAGGAGGGGGTCATCGAGGGCGGCTTCGGACAGAGCGGGAAGTTTAAGATCCGGGTGCCAGAGGGTCTCAGTCTAGAGACTAagcagctcctctcctcctctgccaagAAGAGAGTTAAGGGTGGTGCTAAGGGGGAACCAGCCAAAGAGGATGATGCCAAGACAGACTCTCAGCCAATCTGCATCAACCTCCGATTCAAGAGATACGTCTTTGACCCCCACAAGAAGATGGTTCAGAGCTGACCTCTGCAGCAGCTATAGGATGATACCTGTGATGTCgtgtaaaaacaaaaatgttgCTTAAAAGCTGATCACCGTTCATGGGGAAAGTATTGCTCACTATattttcaatgcatttttctGCGATCGTCACagccgtctaaggcactgcatctcagtgcaagaagcgtcactacagtccctggttcgattacaggctgtatcacatccggacgtgattgggagtcccatcgggctgctcacaattggcc

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU716695 lncRNA upstream 4134 60115628 ~ 60116293 (+) True G630326
TU716718 lncRNA upstream 102508 60017644 ~ 60017919 (+) True G630348
TU716711 lncRNA upstream 113816 60006403 ~ 60006611 (+) True G630342
TU716709 lncRNA upstream 115874 60004097 ~ 60004553 (+) True G630340
TU716644 lncRNA upstream 170177 59949266 ~ 59950250 (+) True G630280
TU716833 lncRNA downstream 144643 60288709 ~ 60293376 (+) True G630453
TU716881 lncRNA downstream 225865 60369931 ~ 60370320 (+) True G630500
TU716882 lncRNA downstream 227478 60371544 ~ 60421878 (+) True G630501
TU716900 lncRNA downstream 245518 60389584 ~ 60522879 (+) False G630513
TU716915 lncRNA downstream 251924 60395990 ~ 60397394 (+) True G630523
XM_021609958.2 mRNA upstream 11137 60107291 ~ 60109290 (+) False mustn1a
XM_036983674.1 mRNA upstream 17916 60084526 ~ 60102511 (+) False LOC110528987
XM_036983678.1 mRNA upstream 17916 60084526 ~ 60102511 (+) False LOC110528987
XM_036983675.1 mRNA upstream 17916 60084557 ~ 60102511 (+) False LOC110528987
XM_036983676.1 mRNA upstream 17916 60084574 ~ 60102511 (+) True LOC110528987
XM_021609963.2 mRNA downstream 194733 60338799 ~ 60355957 (+) True LOC110528142
XM_021609965.2 mRNA downstream 236617 60380683 ~ 60391541 (+) False arpc4
XM_036983684.1 mRNA downstream 236617 60380683 ~ 60391541 (+) True arpc4
XR_005052624.1 mRNA downstream 419527 60563593 ~ 60565240 (+) True LOC118965307
XM_021611146.2 mRNA downstream 487546 60631612 ~ 60635398 (+) True LOC110528988
TU716682 other upstream 11137 60107071 ~ 60109290 (+) False mustn1a
TU716683 other upstream 11137 60107071 ~ 60109290 (+) False mustn1a
TU716681 other upstream 11137 60107360 ~ 60109290 (+) True mustn1a
TU716553 other upstream 202876 59913540 ~ 59917551 (+) False G630206
TU715995 other upstream 412374 59705953 ~ 59708053 (+) False LOC110528122
TU716696 other downstream 3751 60147817 ~ 60148381 (+) True G630327
TU716906 other downstream 324865 60468931 ~ 60483057 (+) True G630516
TU716905 other downstream 348211 60492277 ~ 60496429 (+) True G630515
TU718026 other downstream 1091412 61235478 ~ 61251256 (+) False G631568
TU718031 other downstream 1091412 61235478 ~ 61237049 (+) True G631568

Expression Profile