RNA id: XM_021609981.2


Basic Information

Item Value
RNA id XM_021609981.2
length 2035
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110528154
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60946064 ~ 61041619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttagcatatactttgtggctgtgttatctataGTGGAAACCCTGGCACTTTGCTGACTTGGGAGGTGACTGAACTGTCTTCGGTTTGTTGGGCAGAGAGGAACTTCACAGCTGCTACGGGTGTGGTTTTTAACGTGATAAATCTTAACGAAGAGAACAGTGCATAACATCACTCACACACTGAACGACTAAATTATAACTCAGAGGAAGAGGAGCAACATAGCTCAGCGTCACAGTGGTTTATTGAATTTTGGTTCATTGCAAATTGGCATCGGAAATCGATCTGCTCCGCGGTCTTCACAGCTGGAATACTTTTGCTGAGGTTCCGTGACCCTTTTTCTTGGTCTAAAACGTGAACTTAACTGATTTTATTGACGCGCCCTCAAAATAAATTGTTGTTACACAAAGTTTGTGTCCTCGTAATGACAAACAAATTACATTTTTTCTGTCGGCTTGGATAGAATGTTAAAAAATAGGCCTTAAACTTGGTTTACAAACGAGGAAACATCTGGAATAGAAAAGTGAATTCGGACTAAATTTAATCAATCATTTGGATGCTGGTTTGTGGCAGTCCTGAAGCGTGCACTTGGAACCATGGGGTGTACAGtgagtcaggaagataaagccgCGGCCGAGAGGTCCAAAATGATTGACAAAAACCTTCGAGAAGATGGAGAGAAGGCGGCGAGAGAAGTGAAACTGCTCCTTTTGGGTGCTGGAGAGTCAGGGAAGAGCACTATTGTGAAACAGATGAAGATCATCCATGAGGATGGCTACTCAGAAGAAGAGTGTAAACAGTACAGAGCTGTGGTCTACAGCAACACCATCCAGTCAATCATGGCCATCATCAAGGCAATGGCTAACCTCAAGATCGACTACGAAGAGGCCGCTCGAgcgGATGATGCCCGCCAGCTGTTTGCCCTCTCAGGGGCTGCTGAGGAGCAGGGCATCCTGCCAGACGACCTGTCCAACGCCATGCAGAGGCTGTGGGGCGACGGAGGGGTGCAGGGTTGCTTTACGCGCGCCCGCGAGTACCAGCTCAACGACTCGGCTGCCTACTACCTGAATGATCTAGAGAGGATAGCCAAAGCAGACTACATCCCCACACAGCAGGATGTGTTGCGGACCAGAGTCAAGACCACCGGCATCGTGGAGACACACTTCACCTTCAAAGACCTGCACTTTAAGATGTTTGACGTGGGTGGCCAGCGTTCTGAGAGGAAGAAGTGGATCCACTGCTTTGAGGGAGTCACAGCCATCATCTTCTGTGTGGCCATGAGTGCCTACGATCTGGTGCTGgctgaggatgaggagatgAACCGGATGCACGAGAGCATGAAGCTATTTGACTCCATCTGCAACAACAAGTGGTTCACAGAGACCTCCATCATCCTGTTCCTCAACAAGAAGGACTTGTTTGAGAAGAAGATCACCCACAGTCCCCTGACCATCTGCTTCCCAGAGTACTCTGGTCCCAACAAATTTGAAGAGGCACAGGCCTACATCCAGACCAAGTTTGAGGACCTGAACAAGAAGAAGGACACCAAGGAGATCTACAGCCACTTCACCCAAGCCACCGACACCAAGAACGTTCAGTTTGTCTTCGATGCCGTCACCGACGTCATCATCAAGAACAACCTGAAGGACTGTGGTCTCTTTTAGAGCGAAGCCTGAGGAAGAGTCAAGTCTTTCCTCAGATTACTTGAACAGCTCTGATGACCAGAAGGAAGGATGGGGAAGACAGACTGCACTGGCCAACCACGATTTCTGCTTTTATCTGCTTTTTTTAAAGACACCTAAGAGACTGAGAACTCGGAGAGCCTTGCAGAATTTCAACGATTGCTGATCCAGTTGCTCATAATTGTTAACTCTTTCGGCTAAGACCTtgaatcaaacatttattgtctttttttgttttgtttttctttgtttATTTTCAATTATTCGAGGAGAAAATTGAAAAGTTTTTATTAAATGCTTTCATGTTACTTTACAAAATCTAATGTGCAAATTCCATTAAACTTTTAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU717867 lncRNA downstream 1046 60945121 ~ 60945582 (-) True G631414
TU717763 lncRNA downstream 58453 60885799 ~ 60888175 (-) True G631321
TU717694 lncRNA downstream 90849 60855431 ~ 60855779 (-) True G631253
TU717679 lncRNA downstream 99426 60847000 ~ 60847202 (-) True G631238
TU717655 lncRNA downstream 116980 60829386 ~ 60829648 (-) True G631214
TU717916 lncRNA upstream 7438 61048989 ~ 61049236 (-) True G631462
TU718182 lncRNA upstream 93888 61135439 ~ 61135704 (-) True G631709
TU718183 lncRNA upstream 96658 61138209 ~ 61138512 (-) True G631710
TU718194 lncRNA upstream 118428 61159979 ~ 61160196 (-) True G631721
TU718198 lncRNA upstream 127113 61168664 ~ 61168974 (-) True G631725
XM_021609979.2 mRNA downstream 12881 60930301 ~ 60933747 (-) True LOC110528153
XM_036983697.1 mRNA downstream 124103 60699279 ~ 60822525 (-) False LOC110528989
XM_036983696.1 mRNA downstream 124104 60699279 ~ 60822524 (-) False LOC110528989
XM_036983703.1 mRNA upstream 13838 61055389 ~ 61128515 (-) False LOC110528155
XM_036983705.1 mRNA upstream 13838 61055389 ~ 61128515 (-) False LOC110528155
XM_036983702.1 mRNA upstream 13838 61055389 ~ 61128516 (-) False LOC110528155
XM_036983704.1 mRNA upstream 13838 61055389 ~ 61128517 (-) True LOC110528155
XR_005052712.1 mRNA upstream 115167 61156718 ~ 61158861 (-) True LOC118965385
TU717562 other downstream 198529 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 862771 60083046 ~ 60083857 (-) True G630747
TU716577 other downstream 1029077 59915979 ~ 59917551 (-) False G630227
TU718213 other upstream 149157 61190708 ~ 61191045 (-) True G631740
TU718160 other upstream 156456 61198007 ~ 61199438 (-) True G631687
TU718974 other upstream 649697 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 1179721 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 1179721 62221272 ~ 62222050 (-) False G632994

Expression Profile