RNA id: XM_036983704.1


Basic Information

Item Value
RNA id XM_036983704.1
length 4919
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110528155
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61055389 ~ 61128517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGGCGGACCCTGGACCCACTCGACATCCCACTTTTAAGAGATCAGGAGAATTTTACTCTTGAACACATGACATTTACATAGCATTTGAGAAGGAGCGAACAGggatcacatatatatatatatatatactttttttgccATTTAACAGGTAACAGAAAGAAGAGAAGCCACTAGATGAAGGAAAAACAGTAAAGCAGCGGAGGCAAGATCCGTGTGGAGATATCCGGAGTTGGCACAGTGGCACTCTAGTTCTCTCTGATTCCTGAAGGAAAAGAAAAGAGGACGTCAGCCACAGCACACACAAACccttacacacacatgcaccagcacacacacttacacagacacacaaacacatttacacacaaacacttacacacacacacacacacacacacatacacacacacatacacacatacattggAGCAAAGATGAGTGAAGATAAAGCAGCTGAAAGCGTGGAACCTGCTCCTGCAGTGCCAGTATCAGCTCCAGCACCAGCAGAGATGAACTCTATTCCCAATGGGAAAGGCCATGAGACTGGGGAGGAAACCACAGAAGCAGCCAAAACACCACCAGGAGACACCACAGAGCAGGAAATTGTTCCCAATAGTGCCCAAAATGTCAGAAGTGAGGATCCAGAGGCCAACCTCGCAGAGAGTCAGGAGTTCCTGTCTAACATGGAGGACAAAAAGACCACACGCTTCACAGATTTTGAGGGGAAAACCTCTTTTGGAATGTCAGTGTTCAACTTGGGCAACGCCATCATGGGAAGTGGAATTCTGGGATTGTCGTATGCCATGGCCAACACAGGGGTCGTTCTATTCCTGTATCCGGGCGTATGAGCAGCTGGGCCAAAGGGCATTTGGAACGCCAGGCAAGATGGCTGCCGgcatcgccatcacactgcagaACATCGGAGCCATGTCCAGTTACCTGTACATCGTGAAGTATGAGTTCCCTCTGGTCATCCAGGCCTTCCTGGGGGTCGACAAGCCATCAGGTGAGTGGTACTTGAATGGGAACTACCTGGTCATCATGGTGTCCATCAGTGTCATCCTGCCTCTGGCTTTGATGAAGCAGCTAGGGTACCTGGGCTACACCAGTGGCTTCTCTCTCACCTGCATGGTCTTCTTCCTCATCTCGGTCATTTATAAGAAGTTCCACACCCACTGTCCCTTTTCGGACTTTACCTTTAACAGCACAGCCAGTGTGACTTCTGTTACCAATGACACTGGTTACAACCCAGCCTGCATTCCGAAAATGGTCAACCTCAACTCACAGACGGCCTACACCATCCCAATCCTGGCATTTGCCTTTGTGTGCCACCCTGAGGTCCTGCCCATCTACACCGAGCTCAAAAACCCCACCAAGCAAAGGATGCAGCATGTGTCCAACATCTCCATTGTAGTCATGTACACCATGTACTTCCTGGCTGCTCTGTTTGGATACCTGACCTTTTATGGTGAGGTGGAGTCAGAGCTGCTGCACACCTACAGCCGTCTGGACCCGTACGACACCCTGATCCTGTGTGTCCGTCTGGCCGTGCTCACTGCTGTCACACTCACCGTCCCCATAGTGCTCTTCCCTGTAAGGAGAGCCATCCAGCAGTTGTTTTTCCccaacaagacattctactgGCCCCGTCACATTGCCATCGCTGTCACCCTGCTCACTCTCATCAACATGCTGGTCATCTTCGCGCCTAACATCCTGGGCATCTTCGGCATCATTGGTGCCACATCTGCCCCCTGCCTCATCTTCATCTTCCCTGCTGTTTTCTACATCCGCATCGTACCCGAAGAGGAGGAGCCCATGCGCTCCACCCCCAAAATCCTGGCTGCCTGCTTCGCTGGAATAGGCTTCCTGTTTATGATAATGAGCCTGAGCTTTATCCTCATTGATTGGACGTCGGGGAGTAGCAAAGCCAGCAGCGGTCACTAGACGGCTTCTACCGTCTTCAGTTTTTATGTTGTAAATCTAGACCTGTATGgtattttctctgtgttttcatgGATCATATTTTGTAGAGGATGTACTATCTCTTCCTCCAGAAAGAGTGGGCCAGAGTGTCTAGAAATGGGGAGTTCAGTCTTCTGGAGGTTTCTGCTGCCCGCTGGAAGAATATAGTGCATTCGAAACAAATGTAAAGTCAAGCTGGCTCGCTGAATCTGCCACCACCTCCCATTCCAGCCCTGCCCCCAGACCAGACCCATAACCCATTACCCTATAAACTTGTACTCTGTGAATCACAGCAAGAATCTAACTGCCACACTTTAGTCTAAACAACCACGTAGCTTTCTTCAACAGTAGGggagaagaaggcacaacagatCGTTGGGGGCTGGACAGTTATTTTATATTTGTAGCCAAAGTCTACTGTATTAATTTATTCATGAAATTAGGTCATGGCAAGATTCTGTGAAATAGCTGAGGAAATGTGGCATTAAAAGCTATTGGACAATGGCATCATCCAGTGACTCGTGCTGCTGTCACCCTGGTGGCCAGGTGTCGTCCTACTAGACGCTCGGCTTCAGTCCTCACAGATATCAGAGGATGGAACCATACAACTGATATGCGACTGTacagtgtatacagtgtgtatagagtaGGTTGACTCTACCATTACAGTAGAGTATGATATGTATACAGAGagatttatttttgtataatttttATTTGATAAAGGGTATAATATGGACCTTTTGAGTCTATCCTCAGCAACAGTATCAAGGCTATCATATCACAttggtgtgtctctttgttactTGCACTGAACCATATCAGAATAGCTTTTTCATGGTTCAAGGAGCAGCTCTGATGTCTAAAATTGAAGGAATGCCTGGCTATAATCTCAGTATGAGGGTCTATTTTAGAGGTGGAGGTTATCGTTAACTTGATCCTGGATCAGTGGGGGTTGTATATCTCTGCATTGTCATGTTTAGATCATTTGAGCACTCACTAGGACCAGTGTCCTTAGTGGCGGAGGAGGCTCTCTACCTGGgtctgttgttgtgttgtttctgAACATTTACTGAACGTGATCAGAGACGAACCCAAAAATATGAAGAAAATTCACGGTGTCAATTCATTATGTGGAGAATCAAGGATGACGTGTGTAAATATGGTTATTTCCAGGACAAGAATGTTTTTTTCCCTAACTAAAGTTCAGACTAGTGACATGGTGCCATGATAAGCACACAATGTTGTATCAACGCCTCTCTAACATCACTGCGAAGTAGGTGGTTAGTTATAGCACTGTCAGCTGATATGTACAACTTCTTCCTATAGCCATTAATCAATTGAAATGCAAACAATTTATTTGTAAGATACTCATACGTTTTATAGATATGATTTTAAGGGACAACCCTTTATAATACAAATGTCAATCTCTGAAAAATCTAAACGTCTAAAGCCTAAGTAAATTGTATAATCCTATGTATGTTACATTACAAAACAACATGTATTTAAGGTCTAACATGGTACAAAGACGTTTCCTCCAACTACTTGAAgctctttctctcctgttctgtctgcATAGTGTTCAGCAGCCCTGCAGTGATTTAAGTGTGAACATGGTGTGTGAACATGGCGTGTACATGGTGTGTGAACATGGTGTGTACATGGTGTGTGATCATGGTGTGTACATGGTGTGTGAACATGGTGTGTGATCATGGTGTGTACATGGTGTGTGAACATGGTGTGTACATGGTGTGTGAtcatgctgtgtgtctgtttgtctgctcCAGTATGGAGCAAACCCAATTATGTACAGTGGATGTACTGTAAGgattgtgagtgtgtctgtgttgttGAAATGAAACATGGCTCTACTGTCTTTTAATTGTGGTACTTACTTATACACTATTGTATTGTGAAACGATCAATGGATACATGAACCATAAGTGTAATGTGTAAATCCTAGGCTTATGAATCCCATTGACTCTTACCAAATTAGTCAAATAAGATTCAAAGCCTGACTATGAACCTTTGATAATCTCAGACTGCTCTGTTGTCAGGTATGAGTGGAATAGTATTTCTGGTCAGTTTCTAAGCATCCCTGTAGCTGCTTTTGGGGACTGTCTGCCAACTCTTGCAGGTGTTGAGCAGGTTTGATACAGTAGTCAGATGGAatgtcccctgtctctctctgttgttttcCTTGTGATGAAGTTACAGATTCCACACTACAGTGAGTGCTGTAATTTTGTATATGAGTATTGTATCATTGTGCTGTCAAACTTGGTTGTAAAGCGCAACAAACTCTTCTCTCAATCAATCATTAATACATGTTTCCTTAAAGAATAACCAGTCTGCATGAGCCGGTATACAGTACATCAGGATCAGCCagctctgctctctctatctATTACTCATTTATTTAATAGCTTAATGGATGAATTTGTTTCTATTTAAATAAAGATCCATGTTTAAAGTCATATTTTAACAACATGTTTGTGTTATTCTGATTTCATATACAACTGGTATGTTATTCTCTGACAGATCAGCCCTTACACATACCATGTGTAACACCAGGGGGAGACATTCAGAAAGTGGCTGAGATGATATCTGACTGTCTGGTAACGCTCCTTATACAGTTCTCTCATTTccttgtgtgatttaatgaaattgGTATAGTTCATGAAATATCGACTTCAACCAGCATTTCTAAATAATGTATATAAATGTAAACCCTTTATATTCAATATGCATATCTAGTTTGTATAATGTAAAAAGCCAGaactgtagttttagtcagataATTAaaaagagaaatgtaatcatttttAAAGTGCTTTTAAACTATTTTGCCCTTCattttatgtctttattttattGTATGTCAATATATTTGAATACATTGCTGGCATTTATTGTACTGTAAACAATGTtgcaataaaaacaataaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU717916 lncRNA downstream 6153 61048989 ~ 61049236 (-) True G631462
TU717871 lncRNA downstream 103719 60950729 ~ 60951670 (-) True G631417
TU717867 lncRNA downstream 109807 60945121 ~ 60945582 (-) True G631414
TU717763 lncRNA downstream 167214 60885799 ~ 60888175 (-) True G631321
TU717694 lncRNA downstream 199610 60855431 ~ 60855779 (-) True G631253
TU718182 lncRNA upstream 6922 61135439 ~ 61135704 (-) True G631709
TU718183 lncRNA upstream 9692 61138209 ~ 61138512 (-) True G631710
TU718194 lncRNA upstream 31462 61159979 ~ 61160196 (-) True G631721
TU718198 lncRNA upstream 40147 61168664 ~ 61168974 (-) True G631725
TU718200 lncRNA upstream 43312 61171829 ~ 61172050 (-) True G631727
XM_021609980.2 mRNA downstream 13770 60946064 ~ 61041619 (-) False LOC110528154
XM_036983700.1 mRNA downstream 13815 60946628 ~ 61041574 (-) True LOC110528154
XM_021609981.2 mRNA downstream 13838 60946628 ~ 61041551 (-) False LOC110528154
XM_036983701.1 mRNA downstream 86082 60946628 ~ 60969307 (-) False LOC110528154
XM_021609979.2 mRNA downstream 121642 60930301 ~ 60933747 (-) True LOC110528153
XR_005052712.1 mRNA upstream 28201 61156718 ~ 61158861 (-) True LOC118965385
XR_002474204.2 mRNA upstream 30423 61158940 ~ 61164665 (-) True LOC110528156
XM_021609984.2 mRNA upstream 52748 61181265 ~ 61186850 (-) False LOC110528157
NM_001124525.1 mRNA upstream 106962 61235479 ~ 61236995 (-) False gpx1
XM_021609991.2 mRNA upstream 413486 61542003 ~ 61557188 (-) False LOC110528164
TU717562 other downstream 307290 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 971532 60083046 ~ 60083857 (-) True G630747
TU716577 other downstream 1137838 59915979 ~ 59917551 (-) False G630227
TU718213 other upstream 62191 61190708 ~ 61191045 (-) True G631740
TU718160 other upstream 69490 61198007 ~ 61199438 (-) True G631687
TU718974 other upstream 562731 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 1092755 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 1092755 62221272 ~ 62222050 (-) False G632994

Expression Profile