RNA id: NM_001124525.1



Basic Information


Item Value
RNA id NM_001124525.1
length 1007
RNA type mRNA
GC content 0.46
exon number 2
gene id gpx1
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61218553 ~ 61237064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACCAGGCAAATGGCTGTATGTAAGATGTTCTACGACCTGACAGCAAAGCTCCTTACAGGAGAATTGTTTAATTTCTCGTCTCTTCAGGGTAAAGTGGTGCTGATCGAGAATGTGGCGTCTCTCTGAGGCACGACCACCAGGGATTACACCCAGATGAACGAGCTCCATGAACGGTACGCCGACAAGGGGCTAGTGATTCTGGGGGTGCCCTGCAATCAGTTCGGACATCAGGAGAACTGCAAGAACGAAGAGATCCTGATGTCCTTAAAGTATGTCCGTCCGGGAAATGGCTTTGAGCCTAAGTTCCAGCTCCTTGAGAAAGTGGATGTGAATGGGAAGGACGCCCACCCACTGTTTGTGTACCTCAAGGATAAGCTGCCATTCCCAAGCGACGAGCCCATGGCCTTAATGAATGACCCCAAGTGCATCATCTGGAGTCCAGTCTGCAGGACTGACATCGCCTGGAACTTTGAGAAGTTCCTCATTGGGCCAGCTGGAGAGCCATTCAAGCGTTATGGCAGGAGATTCCTTACCAGCAACATTGAGGGTGACATCAAGGAGCTTCTCAATACGGCTAACTAAACCGTCCATGTTGGTCACACAGAAGCAATGGTGGGGAGTGGAAATCATGTCAATGACTTGTAATGGCTTTTCAAATTATTAAGTATTGTCACACTTTGGGACATGTGCTTGGCCATAACTTAAAAAATAAACAACTTTCAACAGCTCCCCATTCAACAAATACTTCCTCCATACAAGATTAGCTTCTGTGTGACAGCAGCACACCCATTACCTTTTCACATCATGTGCCGTGCTCTCATATGCAAAAAGCTGCTGTGTTCTGAACTTTTATTAAATGAAGGCATCCATTGAAACCAAGCCTTTTGTGAGAGGGATGTCTGATGAAATGTAAAAGACTTAACATAACAGTTGCCTTTGGCCCATGTAAAGCACGACTGTGTTTCAAGAAGTGTAAGAAGTTGGCCAAATAAATTATTTTCCCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU718217 lncRNA downstream 10673 61223581 ~ 61224806 (-) True G631743
TU718158 lncRNA downstream 35027 61199582 ~ 61200452 (-) True G631685
TU718157 lncRNA downstream 48757 61181279 ~ 61186722 (-) True LOC110528157
TU718205 lncRNA downstream 59392 61175822 ~ 61176087 (-) True G631732
TU718204 lncRNA downstream 60140 61175088 ~ 61175339 (-) True G631731
TU718339 lncRNA upstream 137725 61374720 ~ 61378603 (-) True G631863
TU718340 lncRNA upstream 142093 61379088 ~ 61379392 (-) True G631864
TU718342 lncRNA upstream 144375 61381370 ~ 61381669 (-) True G631866
TU718343 lncRNA upstream 144897 61381892 ~ 61382105 (-) True G631867
TU718344 lncRNA upstream 146078 61383073 ~ 61383394 (-) True G631868
XM_021609984.2 mRNA downstream 48629 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 70814 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 76618 61156718 ~ 61158861 (-) True LOC118965385
XM_036983704.1 mRNA downstream 106962 61055389 ~ 61128517 (-) True LOC110528155
XM_036983702.1 mRNA downstream 106963 61055389 ~ 61128516 (-) False LOC110528155
XM_021609991.2 mRNA upstream 305008 61542003 ~ 61557188 (-) False LOC110528164
XM_036983708.1 mRNA upstream 397202 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA upstream 397203 61634198 ~ 61749981 (-) False LOC110528165
XR_005052626.1 mRNA upstream 397852 61634847 ~ 61749981 (-) True LOC110528165
XM_036983709.1 mRNA upstream 563683 61800678 ~ 61921139 (-) False LOC110528991
TU718160 other downstream 36041 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 44434 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 487380 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1151622 60083046 ~ 60083857 (-) True G630747
TU716577 other downstream 1317928 59915979 ~ 59917551 (-) False G630227
TU718974 other upstream 454253 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 984277 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 984277 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 1271224 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1769780 63006775 ~ 63008040 (-) True si:dkey-28n18.9

Expression Profile