RNA id: XM_021609991.2


Basic Information

Item Value
RNA id XM_021609991.2
length 2784
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110528164
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61542003 ~ 61557188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCGATCGCTACTAGTGAGGGAGGCTCACTGGTTTATGAAAAGAAAAACACTGTGGCGTTCCAGTATTCTATTTACAAGACAGAGGGTAAAGCAGATTCACATtgtctGATCCTATTCggatatgaataagaaataaggCTTCAGCGCAACATTGCGATTACATTTTCCCACGTGCGTAAAAGGTAACAAGCTCCACACTAGGACGCTTTGCCTTGCCACCTGTTAACGAAGAGCCAAAGAATACGCGGTACTTTAAAACAACCCTCCACTGTTTAACGGTGGCTGAACATTGCTGCAATTGCATTTTGGGCGTCGCACGAGGACTGGCAGAGGATACGATCAACACAATGGAAAGTACCATATTAAATGAGCAGGACTTTTGGTCATTCAACAAATCCTGGAGGAACTCAACCCTTGGCAACGGGACCACCGGGGGAAACCAGACTAACCCCCTGAAACGGAACGACGAGGTTGCTAAAGTGGAGGTGACCGTGCTCGCCCTGGTCCTGTTCCTTGCCCTGGCTGGGAACCTGTGCGTTCTGGTGGCCATCCACACCACCAAGCACACCCAGTCCCGAATGTACTACTTCATGAAACACCTCAGCATCGCGGATCTGGTGGTGGCTATATTTCAGGTCCTGCCACAACTTATCTGGGACATTACTTTCCGTTTCTATGGACCCGATATCCTGTGCAGGTTGGTGAAATACCTTCAAATCGTCGGAATGTTCGCCTCTACCTATGTGCTTGTTTTGATGTCCGTAGACAGGTGTTTGGCGATTTGTCAGCCGCTTCGGTCTCTGCACAAGAGAAAGGACCGCTTCTATGTGATTATATCGTGGGTCCTCAGCCTATTGTTCAGCAGCCCACAGATGTACATATTTTCTCTGAAGGACGTTGGAGCCGGAGTGTATGACTGCTGGGGTGACTTCGTGGAGCCCTGGGGTGCCAAAGCGTATATAACTTGGATTAGCCTTACCATCTACATCATACCAGTGGCCATCCTGAGCCTTTGCTATGGACTAATAAGCTTTAAGATATGGCAAAACTTTAGAATGAAAACCAAGAGGGACCAGTGCATGAGCCTCACCCCGAAGACTTCGAAAGGCCATGCTCTCGCCCGGGTGAGCAGTGTAAAGCTCATCTCCAAAGCGAAGATAACCACCGTTAAAATGACATTTGTCATAGTCCTGGCGTATATTGTTTGCTGGACACCTTTCTTCACCGTGCAGATGTGGACGGCTTGGGATCCAGCGGCGCCCCGGGAAGCCATGCCCTTCATCATCTCCATGCTGCTGGCCAGTCTGAACAGTTGCTGTAACCCGTGGATCTACATGTGCTTTGCGGGCCACCTGTTCTCAGACCTGAGGCAGAACTTTGTGTGCTGCTCGGCCCGCTACCTCAAGTCCTCCCAGTGCCACTGCGAGCGTGACAACGACTCCAGCCGCAAAAGCAACTCCTCCACCTACGTTATCAAGAGCACCAGTAGCCAGAGGAGCGTCACACAGACCTCCACCACATGAGACGCCCTCACTTCCCACAATGGTACCCCCCCAGTCAGAACTGTaaacccctcacacacaccctccaccacTGCCCCAAACCCACGTTTCTCCTTCCCCTACTGTTGTCCCGCTCCGGGGGAGGCTCACCTAAAACTATTGCACTGATTTTTATATTTCGTCTCAGACATGGTTTGTCAAGAGTAAATTGAACAATTGATTGTTGTACAGATGGAGATTTATTTGGGGACATGTTGAACGTCTCCACTTACAGGCAAATGTCCTGTCGCAGTTCAGAGTGAGTCATCCATTGATTGTGTTTTCAGACTGATGGATTTACATATTTGGTccgtggaggaggacaggagatggTAAATGAAAAATTAAGCACTGACTGTCACTCCCAaccaaggagaggagggagcTGTGTTCTCCTCACCATGGACTTAAAGTCCATTAACATAGGCCTCCCATGCCACAGACTTTGTGTCAATCAGATCTGTAATGGTGGTTTGGATTGTGAATACTGACCAAGACAGTGACATTTCTTAATAATTTTGTCAGCCTGAAGGTAAAGCTACTCTCCTCTTGCATTGCTTTGCACATATTGACATATAGGAAGTCTCCTGTGCTATGTTGCTCATGTCTGTTGTATCACACCATCCTTTAGGTCACACACACAGTACGTTTCAATTATTACACAGTTTGTGAAATGACAACTGCCATATCTGTCATGCTGTAAATGTTTACTTACTTAATTTTACAGAAGGCAACTCAATAAACTAGCTACCATTTTCTTCTAGGATGAACACAAACATCCAAATGTATTTCTATGAAGATTGTGGTGTACTTTGGCAAAAATGTTCCTACGTAATTACTCTGTCTGTACTTTTTGAGCGGTAGGCTGACGTCTTCTTCATTGCAAAATAGGATTGAGAAAATGGATTACACACACTCAGAACACTCAGAATTGGGAGAGCAATTCCATGAATCCTGCTTTGATCTATCTGGATTATTCAGTGTATTTGAGAACCTATTGCATAAAGAGGGTGACCTGCCTTAATTATGAATCTACTTGAAACTGTGTTCCTTGTGCACATCACAAATGGCAGTATTCTTTTATGTTACTTTTTACAAAGTTGGCTTCTGCTTGTACTGTAAACGTCTTGGTTTTCGATCCTTAAACCTACTGAACATTTAATAGAAAACATCATTTCCTTATTTGCATTtaaagtacatactgtatgtatctctTATTTATTTGAAATAAATTGTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718867 lncRNA downstream 13974 61527756 ~ 61528029 (-) True G632356
TU718849 lncRNA downstream 49872 61488767 ~ 61492131 (-) True G632340
TU718455 lncRNA downstream 89371 61451587 ~ 61452632 (-) True G631978
TU718344 lncRNA downstream 158609 61383073 ~ 61383394 (-) True G631868
TU718343 lncRNA downstream 159898 61381892 ~ 61382105 (-) True G631867
TU718937 lncRNA upstream 66849 61624037 ~ 61624341 (-) True G632423
TU718941 lncRNA upstream 75492 61632680 ~ 61633563 (-) True G632427
TU718965 lncRNA upstream 101236 61658424 ~ 61658686 (-) True G632450
TU718968 lncRNA upstream 104631 61661819 ~ 61662023 (-) True G632453
TU718975 lncRNA upstream 135628 61692816 ~ 61693145 (-) True G632460
NM_001124525.1 mRNA downstream 305008 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 355153 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 377338 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 383142 61156718 ~ 61158861 (-) True LOC118965385
XM_036983704.1 mRNA downstream 413486 61055389 ~ 61128517 (-) True LOC110528155
XM_036983708.1 mRNA upstream 77009 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA upstream 77010 61634198 ~ 61749981 (-) False LOC110528165
XR_005052626.1 mRNA upstream 77659 61634847 ~ 61749981 (-) True LOC110528165
XM_036983709.1 mRNA upstream 243490 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA upstream 243490 61800678 ~ 61921139 (-) False LOC110528991
TU718160 other downstream 342565 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 350958 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 793904 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1458146 60083046 ~ 60083857 (-) True G630747
TU716579 other downstream 1624452 59915979 ~ 59917551 (-) True G630227
TU718974 other upstream 134060 61691248 ~ 61691644 (-) True G632459
TU719566 other upstream 664084 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 664084 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 951031 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1449587 63006775 ~ 63008040 (-) True si:dkey-28n18.9

Expression Profile