RNA id: XR_005052626.1


Basic Information

Item Value
RNA id XR_005052626.1
length 1780
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110528165
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61634197 ~ 61749981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGAAGAAGGAAACGTCATCCTCCCGGAAGTGTGCATTTGGTACGAAAATAAATCTACGCGCGATTATACATAGCTAACTTGCTCGTCACAGAGTTTCTGAATTATTTTCTCACTTTTGGTTTAGCGAATCAAAACTGTAAGAAACGAACTACTGCTTATCAAGCACTGTCATCATGGCCAATTTGAATGAAGCTGATTTACCACCAAATCTGACTTGCCTCAAAAATGTTGATACCATTCTCCGATGTCCCATTTGTTTCGAATTCCTGAGTATCGCAATGATGACCAAATGCTCTCACAACTTCTGCTCTTTGTGCATAAGAAAATGTATGTCCTACAAATTACAATGTCCAGTATGCAATTCACCTACAACAGAACAGGACCTAAGAAACAACCGGATACTGGATGACCTGGTCACAAACTTTAAATCTGCAAGACAGCAGTTGTCAAATGCTAATTTTGACTCGCCTCCAATATCCCGGAAGGCCCCGGCCTCATCTGTCAAGTGTAAAAAACCTAGACAGACAACGGGCCCCAAGAAGGAGGCCTCCATCTTCAATCACTTTTTCCGAAAGGGGCCCACCACCTCCACAACTTCTCTCACTACAGAGGCCACGCCAGCACAGCAACCTATTCCATGCAGAAAGAGACTGTCTGGCACTCCTCTACGTAGCCAAACTGTGAAGGAGGGCCCCCGTCCTACACAGACTGTGAAAGTAGACCCTGATCATCAGGTCTCTGTGAAGGAGGAGCCCATTGAGGACATACCGCCCCAGGTGCTGGTGTCTGTAAAGATGGAGAAGATTGACTTCTCCATGACAGGGCTGGCGTCCCTGGCTGATTCACAGTCCTCATCACAGGACCTGAAGCCTCTAGTTAAAGTGGAGTGTCCTGTGTGTTCTGTGGGCATCCTTGAACAGTTCATCAACAAGCACCTGGACAGCTGTCTGACCCAAGGGGAAAAGAAGGAGAGCCTTAGGAGCTCCCTAGGTGCCAAGAGGAAGCCGATGAGGAAGCTGGTATACACACTGCTGTCCATGCAGGAGCTGAAGAAGAGGCTGAAGGAGTGCCACCTCTCTGCCCAGGGCACCAGAGACCAGCTGGTCAGGAGGCACCAGGACTTTGTACACTTCTACAATGCCCAGTGCGACGCCCTCGAACCGAAATCAGCCAAAGACATCGCCAAAGAAGTGGAGGCCAACGAGAAGGCCAGGAACCAACTGCAGGGGAAAACCAAATGTGCTATGGTCTTCTCTAAGAACCTAAGTCTGGGGCAAATCGACGAGATGCATTCAACTTACAGGAAGCAGCATAACAGTGAGTTCTCCCGCCTTATCGCCCAGGTCCGGGGTCGCCTGGAGACTGCGAGGACGATGGAGATAAAGCAGGAagtgagggatgagggaggagaggaggaccaggGAGTGGGCTCCAGCTCTGCAGATAAGGCAGCACAACAGGAACAGAGTGATCCCAGCCCCAGTGACTCAGAGGCCTGCTGCGTATTGATGACATCATCCATGGAGGAGCCCTCTGAGAAGCAGCAGCAGCCTTCTGTTGTAGCAGTCATCTCCAGGTCACCCAGCCCATGTCTCAGTGAGGTGTCCATCAGCAGGTGAGGGAGCCCAGGAGACGGCAGAATTGAGTAAGCTCCGTCTCCGACATCTTCGCTGGCAGATGCTATGAAGTTTTGGAGAACGCCTCGAGTGGGAAACGGGCTTCCTGCTCCAAGGAGGAAGACTCTTCTCTGCCACTTGTCCTGGGAAAACGAGCCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU718941 lncRNA downstream 1284 61632680 ~ 61633563 (-) True G632427
TU718937 lncRNA downstream 10506 61624037 ~ 61624341 (-) True G632423
TU718877 lncRNA downstream 77680 61556382 ~ 61557167 (-) True LOC110528164
TU718867 lncRNA downstream 106818 61527756 ~ 61528029 (-) True G632356
TU718849 lncRNA downstream 142716 61488767 ~ 61492131 (-) True G632340
TU719003 lncRNA upstream 50697 61800678 ~ 61803767 (-) True LOC110528991
TU719066 lncRNA upstream 96621 61846602 ~ 61847677 (-) True G632544
TU719161 lncRNA upstream 227745 61977726 ~ 61979080 (-) True G632638
TU719208 lncRNA upstream 265361 62015342 ~ 62015725 (-) True G632683
TU719491 lncRNA upstream 387538 62137519 ~ 62137858 (-) True G632933
XM_021609991.2 mRNA downstream 77659 61542003 ~ 61557188 (-) False LOC110528164
NM_001124525.1 mRNA downstream 397852 61235479 ~ 61236995 (-) False gpx1
XM_021609984.2 mRNA downstream 447997 61181265 ~ 61186850 (-) False LOC110528157
XR_002474204.2 mRNA downstream 470182 61158940 ~ 61164665 (-) True LOC110528156
XR_005052712.1 mRNA downstream 475986 61156718 ~ 61158861 (-) True LOC118965385
XM_036983709.1 mRNA upstream 50697 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA upstream 50697 61800678 ~ 61921139 (-) False LOC110528991
XM_036983711.1 mRNA upstream 409994 62159975 ~ 62174455 (-) False LOC110528169
XM_021609996.2 mRNA upstream 409994 62159975 ~ 62175488 (-) False LOC110528169
XM_021609997.2 mRNA upstream 409994 62159975 ~ 62175491 (-) True LOC110528169
TU718160 other downstream 435409 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 443802 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 886748 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1550990 60083046 ~ 60083857 (-) True G630747
TU716579 other downstream 1717296 59915979 ~ 59917551 (-) True G630227
TU719566 other upstream 471291 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 471291 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 758238 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1256794 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 2035791 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile