RNA id: XM_036983709.1


Basic Information

Item Value
RNA id XM_036983709.1
length 7411
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110528991
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61800678 ~ 61921139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCCCAGCAGCGCAAATTTTCAGAGCGCGCACAGCTAATCATAGAATAATCGGTGTCGACTGCGCACGCTCAACAATTCATTTTTGGGCACTCTAGAAAACACCAACCACCGGAATGAGTGAACGATTTGCCTACACTCCCATCATTTTATGTCCATTATTTTATTGCTTTGAGTAGAATGATTTTGCTTTTCTCCGCTGCAGCTTTTGCTTTGGATGGCATTCTATCTCAAGAAAGGACGAGCCCCTCTTCTCTCACAGAAGCATAGCATTTCTCTGCAAGAGAGAGACATACAAGCCCTATGCAGGTGAGCATTAGGCGAGCTAACTATAGAATGTCGCTTTGCATTTCTTTATTTAGTGTCTAGTGTTACTTGGAAAGttaggatttttgttgttgttgcattgaGCAAATCGGACACACAAAGAATACGAAGAAAAGCGCAGCAAGAGTCGAAAATCATAAGAGGACCTCTCGCGCAAGCCTCAACATCTCACCGAGTCTCACCCTCATACCTCAGGAAAAAATGTCATCTCAAACTAGAGTCAAGAAGGACAAGGAGATCATAGGAGAATATGAAACGCAAGTCAAAGAGATCCGTAACCAGCTGGTGGAGCAGTTCAAATGCCTGGAGCAGCAGTCCGAGTCTCGTATCCAGCTGCTGCAGGACCTGCAGGACTTCTTCCGCCGCAAGGCTGAGATCCAGCTGGAGTACTCCCGCAGCCTGGAGAAACTGGCCGAGCGATTCTCCAACAAGATCCGCAGCTCCAGAGAACACCACCAGTTCAAGAAGGACCAGCACCTGCTGTCCAGTGTGAACTGCTGGTACCTGGTACTGAACCAGaccaggagagagagcagggaccacGCCACCCTCAATGACATCTATACCAACAACGTTATCGTCCGCCTCGCCCAGATCAGCGAGGACGTCATCCGCCTCTTCAAGAAGAGTAAGGACATTGGGATTCAGATGCATGAGGAGCTGGTGAAAGTGACAAACGAACTCTACACTGTGATGAAAACCTACCACATGTACCACACAGAGAGCATCAGCGCTGAGAGCAAGCTGAAGGACGCTGAGAAGCAGGAGGAGAAGCAGTTCAGTAAGTCTGCTGACCTCAACGTCCACCTGCTGCGCCACGAGGACCGGCCCCAGAGACGCAGCTCCGTCAGGAAGATCGAGAAGATGAAGGAGAAGagGCAAGCCAAGTACTCCGAAAACAAGCTGAAGTGCACTAAAGCCCGCAACGACTATTTGTTGAACCTGGCAGCAACGAATGCCGTTGTGGCGAAATACTACATCCACGATGTCTCTGATATGATTGATTGCTGCGACCTGGGCTACCATGCCAGCCTGGCACGTACCTTCAGGACCTACCTGTCAGCTGAGTACAACCTGGAGACTAGTCGCCACGAGGGCCTGGACATCATGGAGAACGCCGTGGACAACCTGGACTCCCGCAGCGACAAGCACAAGATCATGGACATGCACAACCAGGTGTTCTGCCCTCCCATGCGCTTCGAGTACCTGCCCCACATGGGGGACGAGGTGTGTCAGGTGAGTGCCCAGCAGCCTGTGCAGACTGAGCTCCTGATGCGCTACCACCAGCTGCAGTCCCGCCTGGCCACGCTCAAGATCGAGAACGAGGAGGTGAGGAAGACACTGGACGCCACCATGCATACCATGCAGGACATGCTGACTGTGGAGGACTTTGATGTGTCCGATGCCTTCCAACATAGCCGCTCCAATGAGTCCATGAAGTCTGTTGCCTCTGAGACCTACATGAGCAAACTAAACGTGGCCAAGAGACGGGCCAATCAGCAGGAGACAGAGGTCTTCTACTTCACTAAATTTAAGGAGTTCCTGAATGGCAGCAACCTCATCATTAAACTGCAGGCCAAGCATGACCTCCTGAAGCAGACACTGGGAGAAGGAGAAAGGGCTGAATGTGGGACTACGAGGCCCCCCACTCTACCCCCTAAACCACAGAAAATGCGGAAGCCTAGGCCGCGCTCCATCTATAACCATAAACTGTTTAACGGCAATATGGAGACCTTCATCAAGGATTCTGGTCAACCTATTCCTCTTGTGGTTGAGAGCTGTATTCGACACATCAATTTGTATGGGCTCCAGCAGCAGGGCATATTCCGTGTGCCTGGATCCCAGGTGGAGGTTAATGATATTAAAAACTCATTTGAGAGAGGCGAAGACCCATTGATTGAAGACCAGAATGAACATGACATCAACTCAGTGGCAGGGGTCCTCAAGCTGTACTTCAGGGGCCTGGAGAACCCTCTGTTCCCCAAGGAACGCTTCCTGGATCTCATGTCTACTATAAAGCTGGAGTCTGGAGCTGAGAGAGCGCATCACGTCCAGCAGATTGTTGTGACTCTTCCTCGCACCGTCATCATTGTCATGAGATACCTGTTCGCTTTCCTCAATCAtCTATCCCAGTACAGTGATGAGAACATGATGGATCCCTATAACCTGGCCATCTGCTTCGGCCCCACCCTGATGCCCATCCCCGACGGACAGGACCCTGTAGCCATCCAGGCGCATGTCAATGAGGTCATCAAGACCATCATCATCCACAACGAGGTCATCTTTCCCAGCCACCGTGAGCTGGACGGGCCAGTCTATGAGAAGTGcatgactggaggagaggagtactGTGACAGCCCCCACAGTGAGCCAGGCACAATCGATGAGGCTGACAACGGGACTGAGCCACACACCAGTGATGACGAGGTGGAGCAGATTGAGGCCATCGCTAAGTTTGACTATGTGGGGCGCACCCCCCGGGAGCTGTCCTTTAAGAAGGGAGCATCACTACTGCTGTATCACCGCGCCTCTGAGGACTGGTGGGAGGGGCGGCACAACGGTGTGGACGGACTGATCCCACACCAGTACATTGTGGTGCAGGACCTgGATGATGCGTTCTCAGATAATCTCAGTCAGAAGGCGGACAGCGAGGCGAGCAGCGGACCACTGCTGGATGACAAGGCTTCATCCAAAAACGATGTCCCATCACCGTGTGAACACTCCCCCGACTGCAACTTTGGAGGAGTCATGGGGAGggtGAGGCTACGTTCTGACGGGGCCGCCATCCCTCAGCGCCGCAGCGGAGAGACCCACAGCCCTCCCCGGGGAACAGACACACCCCCGCGGGCCGCAGCCTGTCCCAGTAGCCCCCACAAGATGGCAGTGAGCAGGAGTCGCATGGAGAGCCCGGAGAAGAGGCGCCTGGGCACATTTGGCAGTGCGGGCAGCATCAACTATGCTGACAGGAAGGTCTACCCCGAGGGCCACCCCCTGAGACACGTACCAGGGGCCACACGCCACAGCAGCCTGGGGGACCACAAGTCACTGGAGGCTGATGCCCTGGCAGAGGACATAGAGAAGACCATGACCACGGCCCTACATGAGCTGCGTGAGCTGGAGCGCCAAAACATGGGCAAGCAAGCACCAGACGTGGTGCTGGATACCCTGGACACCACCATGAAGAAGCCTGTGAACTCGGAGCCCGGCAGCCCCCTCCACACCATCATGATCCGTGACCCGGACGCCGCCATGCGCCGCAGCAGCAGCTCCACCTCTGAAATGATGTCCACCTTTAAGCCTGCCTTGTCGGCACGTCTGGCCGGAGCCCAACTGCGCCCCCCGCCCATGAGGCCCGTCCGCCCGCCCCCCACCGGGCACCGCTCCTCCAGCTCCAGTTCCTCCGGGGTAGGAAGCCCGGCTGTCACCCCCACTGAGAAGATCTTCCCCAACAGCACTGCCGCGGCTAGCTCCGCAGCTAACGCAGCCGGGGACAAGTCAGGCACCATGTAACTCTGAGGGAGACTCTGGGTTTTCATGTTGCAACAGCTTGAAGGAGAGGAAAGCCCATAGAAATGCGATGATGTGTTGTCAATATGTTCTCAGAGAACATGTGTGGATTTTCCCTCTCCTTGTTTTGAGTTTCACTTTATTTCTTGAATTCAGAAAGCTCCTGGAGTGAGCCTGAGTTGCCATAGTGATGGCAGGTGGAGAGGCTGTAGGGGTTTTATAGCATATTAACTCAACACTCTGAAGCTTGATGTGAAAACGGACTTGAAAAGAATGAATAAAATCACCTCAAAGTAAAAGTCATTTTTTCGTTTTTACCTCAAAATGATGTCTGTGGCCAGGCCCCGCTTTTTAGAGATTCATTGACTGCAAGACGTGAAGAAGTACTTGTGTAATTTTGGCGTTGGTTTTCATCCTGCACTGGTCCAGATGATGTCTGATCCCTCCTTACTGGTGTGTATGAGACTCTTCTCTCTGGACTGGACACTCAGTCTACCAGACTGCTTCTAAGAGACTGAAACCAAGATGGCCATCTGCCTTTTGGCTGTAAATAGAGACTTACTTGAAGTTGTTATGCCTTTTGTTTGTACTGTAGTATAAGGGATGTTCAGAAAAGTAACAACATGTCAACATTGTATACGTATATGAGATGCAGAAAACTGAACCAATATACCAACTAATTGTAAGAAACTCAAAATGTAGTTTAACTTGTATATAGTTATTGATTAGTatgtattttttgtgtgtgttaatCTTGTACAGGCCAAGACAGAACAGGCAAGTAGATGTGAATGGCATTGtcaaaaaacaaacacaaatagTCAACCAGCAAACAACGAAAAAATATCAAAAGGCTTCTGCTTCCTTTGTTATTTTCTTCCCTTTCTCACACACATCACAGCACTGACAGTTGTGTTTAGAGTATGTGGACATGTGGATGTCATCATACCACACATTGTATTTATGAGTTAAAACTACATTTGAGCTTCTCTACTCAAATGGATCCTGATTCTGTCTTCTGCCCACAGCAGTTCTTCATGCACTGTAAATAAGGCCAAGTCGGTCTCCAGTTGAGTTGAGTCTGCTTTTATTCCATTTGTATTGTTGAAATGCTTTATCATTCCTCATATACATACTTCCAATATATTATTCAGATTTAAGACAGTAAAATGAGTGCATTATACCATAGTTTGCCATGGTAAGGTTTGAGCCCCCTTTTATGAGTTTGTAATACTGTGAGAAtactgttgaccatggccctTAATAACCCCATAGCCCCTCACTGTTCCAACAGCTCAACACAAGAGCCTGTCTTCTGCTGACACAGCAACCTGTGTGAAGTCAGTCCACAACTAGACACTAATTTGTGTTCCTTAGACGCACCCGATTTCATACTATTCATACCTTGCCATCTTTAAAGCAACCTCTTGCCTGTTCAACGTCTGATTTATGTAATACTTTCTACGCACAAAATATGTTACAAAGTACTGTTACAATATTCCTTTTGATCTGAAATGTGATACCTTACCTAGACAACTCCAGTGTTGCCTGAGAAGTTAACCGTAAATGTTGTGATATAATAACAGCAGAACAGTGGTCTTACCTCTCCTCCCCTTGGTTCTAACATCCTCACTGTCATGTTCCAGTGTCTCATCCCACTTCTTGTTTTCAGTCCTTTGTAGCGAGGAAATACAAGTGCGTACTGAAAGAGGTTGACACTGTAGGCCTATACTGTAGCTGCCATGTTAAATTGTAGCTGGCCCAAGCCCGCACCTGCCTCTGCTCAGTCCTATAGTTGTGTGTTTGGACTGCCTTATGTGCCGcatgccctgccctgtcctgcatGTTTTATGCTGTACCATTTGACACAAACAATGTGACAATTGAACAATGACTGTTTGCGGTGCCTTTCCTCTGTAAAATGCACAAGTGACTTAATGTTTCGGCCTTTTGCTTTCGAGGGTTGGGCTATACCCTAGTAGTTAACCATTTTGGAACATGTGAATACCTGTTGTCACTAACATGTAGCAGTAACATGTGGGCAATGGAAGTGAATTGGCAGCCAAGGTGGGACAAAAAGTCAAGGACAGATATATCAACCTGAATCTCATGCTGTGATTCCAATATCAATCATATGTACATTATTCAGCCACTGTTATGTGTGCAAATCTTGATTTCATACACATAGTTTCCTATGAGATACATACTTTCACTGGAAAAAGTTGTCATGATCTCATCCCAGTGATTTGTTTGCCATGTGCGTTTTGTTTACCACAAACATTGCAGTCAATTCTGTCCACCATCTGTTGACCCCTGCTGGGTAGATTCTAGCCTACATGCAGGGCACACAGAGACAAGTCAAACAACATAAGTTATACACTTACACCCTCTGCTGGTCATATATGGTATTGCTTTAACTAGAAGTACTGTGATTCTGGTCAGGTATGAGTAAACCGGTGGCACTCTCCATCAATAGGAACTGTCACTGATGACAACCAAATCACGTTTTTTTTCATCTTGTTGAACTACAAGAATTACATAACATTTTTGTATTAACCACAGTTCTCATCGGTATAACTGAAGAGTCCATTATAGTGTTCATTTTTCTCAAACATACATAAGCTGTATTTTCAAAGATAAAGTAAAACACGTACTAAATGTTAATTTGCAAaagtaaaatgtatatatttgtttattagtattttgtttatttatgtcTAAAATGAGTAAGTGCCTTTTGTGCACATCATCAGTTTTTAATGAACTTGTATAATACCTTTTTTAACGATAGAGTAATTCAGTCATGTTTGATATTCACTTTTATCATATTTTCCCCTTTCCACACATCATTTCATCTGAGGAATATCAAGAAAACAAGTGATGTAAATATGTACTGTACACATTGCTATAGAGGAATTACTATGACCCCTTCAGATGTCATACTACCAGAACGACTGAAATGTAGTACTTACTTGTATGATTGATTGTCTAATGTGCTCTAGTTGATTCCTGGAGGGGTAAGAGATTTATAAAGAGGACTTGGACTGCTGTACATTTACTCATTGATGGCATCGTTCAGTGAAATCATCTCTGATTGATAATTTCATCCTTTCtttctgttttctgtctgtggttGAACCTTTACTTCTTCTACTCATATACTCATCCTCCTCCTACAAAGTGAACGCACCACTGCAGTGTTACTCCTCTACTTGCATGGTTTATAAGGCACATGGTGAACTCTCTTCTTCTTTGAGCTGTATATGATGTTCTGTTCAAGGAAGTGTTTTGATTTCTGGAATGTATGCTAAACCTGGGTAATGGATGTTGTATGTTGGCTAATAACAATGCTTATGAAGTAACATTCAGAGACCAAACTGGCTGAGTGCCTGTGGTGGTGAGTGTGAGTTGTCGTCATActgttttctctctcgctctctctcgctctcgctctctcatgtCTCCCTGTTCATGAGTGCTGACTGGTTAAATCccctgtaatgtaatgtacaccATGCCACTGTTTGGATGTTTAGAACCGTTATGTCCAAATAAAAAAACTAATGTTGCCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719001 lncRNA downstream 41713 61743310 ~ 61758965 (-) True G632483
TU718993 lncRNA downstream 82837 61717473 ~ 61717841 (-) True G632476
TU718994 lncRNA downstream 82933 61717364 ~ 61717745 (-) False G632476
TU718992 lncRNA downstream 82933 61717473 ~ 61717745 (-) False G632476
TU718991 lncRNA downstream 83795 61716541 ~ 61716883 (-) True G632475
TU719161 lncRNA upstream 56587 61977726 ~ 61979080 (-) True G632638
TU719208 lncRNA upstream 94203 62015342 ~ 62015725 (-) True G632683
TU719491 lncRNA upstream 216380 62137519 ~ 62137858 (-) True G632933
TU719494 lncRNA upstream 219813 62140952 ~ 62166943 (-) True G632936
TU719518 lncRNA upstream 255782 62176921 ~ 62177177 (-) True G632960
XM_036983708.1 mRNA downstream 50697 61634197 ~ 61749981 (-) False LOC110528165
XM_021609992.2 mRNA downstream 50697 61634198 ~ 61749981 (-) False LOC110528165
XR_005052626.1 mRNA downstream 50697 61634847 ~ 61749981 (-) True LOC110528165
XM_021609991.2 mRNA downstream 243490 61542003 ~ 61557188 (-) False LOC110528164
NM_001124525.1 mRNA downstream 563683 61235479 ~ 61236995 (-) False gpx1
XM_036983711.1 mRNA upstream 238836 62159975 ~ 62174455 (-) False LOC110528169
XM_021609996.2 mRNA upstream 238836 62159975 ~ 62175488 (-) False LOC110528169
XM_021609997.2 mRNA upstream 238836 62159975 ~ 62175491 (-) True LOC110528169
XR_002474207.2 mRNA upstream 254842 62175981 ~ 62185946 (-) True LOC110528170
XM_021608282.2 mRNA upstream 423943 62345082 ~ 62347315 (-) True LOC110527134
TU718974 other downstream 109034 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 601240 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 609633 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1052579 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 1716821 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 300133 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 300133 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 587080 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 1085636 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1864633 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile