RNA id: XM_021609995.2


Basic Information

Item Value
RNA id XM_021609995.2
length 3163
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110528168
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62024859 ~ 62135585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATGGGGGAGAACATACCCTAATGTAGGATCGTGTCTTCTGGACCTGTCTGACCCTATAGTTTTGGACATTATTCAATTTCAAGTTGCCGAACGTCTTGAATGAGAATGAATAAAGGGGGCCCTCGGTCGACCACATCGCTTCCACCGGAGCCGGTGGAAATCATCCGTAGTAAGTCGCACACCCGTCGGGTGACACTCAATGTTGGTGGTCTTCTCCACGAAGTTCTATGGAGAACGCTGGACAGGTTGCCCCGAACAAGGCTGGGCAAGCTACGAGACTGTAACACCCACGAGTCTCTCATGGAGATATGCGATGACTACAGTTTGGATGATAATGAGTATTTTTTCGACAGACACCCTGGGGCTTTCACGTCCATTCTGAATTTCTCCCGCACGGGAAAGTTGCACATGATGGAGGAGATGTGTGCTCTGTCTTTCAGTCAGGAGCTGGACTACTGGGGTATAGATGAGATCTACCTGGAGTCCTGCTGCCAGGCCAGGTACCACCAGAAGAAGGAACAGATGAATGAGGAGCTCAAACGAGAGGCTGAGTCTATGAAGACCAGGGAAGGCGAGGATTTTGATACCACATGTTGTTTTGAGAAGCAAAAGAAACTTTGGGATCTCCTGGAGAAGCCTAGTTCATCGTTAGCTGCTAAGGTCCTGGCCATCATCTCCATCCTCTTTATCGTGCTGTCAACTATTGCCTTGTCTCTGAACACCCTCCCGGAGCTGCAGGACATAGACGAGTTTGGCCAGGTGACAGACAACCCTCAGCTGGCTCACGTGGAGGCGGTGTGCATCGCCTGGTTCACAATGGAGTATTTGCTCCGCTTCATCTCCTCGCCAAGCAAGTGGAAGTTCTTCAAGGGTCCGCTGAACATCATTGACCTGCTGGCCATCCTGCCCTACTACGTCACCATCTTCCTGACTGAATCCAATAAGAGTGTTCTACAGTTCCAGAACGTCCGGAGGGTGGTGCAGATCTTCAGGATCATGCGTATTCTGCGTATTCTGAAGCTAGCCAGGCATTCCACAGGGCTCCAGTCTCTGGGCTTCACCCTGAGGAGGAGTTACAACGAGCTGGGCCTGCTCATCCTCTTCTTGGCCATGGGCATCATGATCTTCTCCAGTCTCGTCTTCTTCGCTGAGAAGGACGAAGAGGACACTAAGTTTAAAAGCATCCCGGCCTCCTTCTGGTGGGCCACCATTACTATGACTACGGTGGGGTATGGCGACATATACCCAAAGACTTTATTGGGCAAGATTATTGGGGGTCTGTGCTGCATAGCTGGAGTGTTGGTGATAGCCTTGCCCATCCCCATCATCGTCAACAACTTCTCAGAGTTCTACAAGGAGCAGAAGAGGCAGGAAAAGGCCATCAAGAGGCGGGAGGCCCTGGAGAAAGCCAAGAGAAACGGCAGCATCGTCTCCATGAACATGAAGGAGGCGTTTGCACGTAGCGTCGAGCTCATGGACGTAGTGGTAGAAAATAATGGAGAGAACATGGGGAAGTTGCAGGGCAACCATATGTCTCCCAGCTACAGGAAAGGGACTCCCAAGCGGACTACCTCAGAGACGGTTTCCGCCAAGTCCCTGGAGCCCAGCTCACCAGACAAAGCCCGTCCTGGAAGCCCTCAGCACCTCAACGCTCAGAAACTGGAGGAGATGTACAACAAGATGGCCAAGACCCAATCTCAACCTAACCTTAACAACAAGAACAAGGGACCTTTATCTAAAGCAGCCaagaagagagatgagatagagaTGGGAAGCATCCCCATGGAGCCTGCCCCAACCACAGATATGAGGAGCATGTCCAGTATTGACAGCTTCATGAGCTGCGCTGCCGACTTCACCGAAAGCGCCCGCTTCTCTCACAGCCCCAGCACCAGTGTACCAGGGAGGGTTAGCGCCAACCCCGTGCTTGAGATCACCCTGGAGGATGAGGCCATGGACGGCCCTCACACTGCTACCAAGCTCCCTGGAGGACGAGGCTCTAAGTGCGGCCTCCCTGACAGCCCCCGTGGAATGCGCTTCAGTAACCCTCTCAAGAACCGCTCACTCAAGGTCAACTTCAAAGGTGGAGGCGcggacccctcctcctccttctcaacACAGGGTCCAGTGGGTGGGGCCCTCTCAGATAGCTCCGCCCTCTCTGACCACTCCTTCATGAGTCCTGAGGTGTCTGTCTACACCACCGCCAGCAGCAGGACCCTACCCCATGAGACCCTGATCCCCACAGTCTTCACATTCCACGACGCTTCCATTAGTAAGTTCATCGACGCTGACACAGACGAGGAGGAGCACCTCCATGATGGCTCAGGCACCAACCCTTCCCAGAGGCTCCTGGGAAAAGCCAGCCCCAAGCTCAGCTCCCATAGCAGCCACCACATTGCAGCCAACCACCTGGAGGGCTCCCAGAGGATGCTGGCTAATAGTGTGTTCCCCTTGGAGGGCAGGCCAGGGGGGGGACAGGAGAACCATGTGCTCTCCCGGGTAGAGAGGAGTTGTTCAAACACCAATAATGAGAGCAAGTGAGGCAGGAGGAGGGAAAAGGTAGTATAGAGAGCACCCAAACAGGAGGACATGGTGCAAACACTACAGAGaaataaaagaaaacatgaacTCTAACCCATACCAGGAGCTGCACCTCTACTCACTTGAGTAAAAGGCACTGAAAACACATTTGGCGTTTTGTTTTGGTTTGTAACAAATGCCCAATAAGTATAACTTTTGGTACACAGGACGGAGCTTACACTTCCTTCCTTTTCCTGCTACTTGAGTGCATAGACTGTCAGGATGGCAGCAAAATTACTGAAGGCATTGGGAGATGCTACTGTgggactgagaaagagagggtgCATTGCTGTGTCCAAAGGGGATACACATAACTCTGCAGAATCAGGTCATGCACTGTAGATTTAGCCATTACTGAATCAACATTGTGTTAAGAGAAATTTAGTTTGTTTTCTTCCCCAAAACTGGCCTTAGTTACAGTATATGCGACTGTGTGTATGCATagcatgtgtgcgtgtgcttgtatGTCTGTGAGTGTATGTTTATGCATGATGATAGGCAgataaacatacacatacacacacaggcatacatcATTTTATGTATATTATTTTTccgttcttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04885 KCNB1, KV2.1; potassium voltage-gated channel Shab-related subfamily B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719214 lncRNA upstream 3621 62020962 ~ 62021238 (+) True G632689
TU719212 lncRNA upstream 5961 62018609 ~ 62018898 (+) True G632687
TU718783 lncRNA upstream 36201 61978087 ~ 61988658 (+) True G632277
TU718676 lncRNA upstream 265910 61743164 ~ 61758949 (+) True G632183
TU718667 lncRNA upstream 289910 61733583 ~ 61734949 (+) True G632174
TU719340 lncRNA downstream 41955 62177540 ~ 62177761 (+) True G632796
TU719323 lncRNA downstream 82910 62218495 ~ 62218746 (+) False G632780
TU719324 lncRNA downstream 82910 62218495 ~ 62218697 (+) True G632780
TU719316 lncRNA downstream 88160 62223745 ~ 62228008 (+) False LOC110528171
TU719317 lncRNA downstream 88160 62223745 ~ 62228008 (+) False LOC110528171
XM_021609994.2 mRNA upstream 11524 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 28561 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 317533 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 485140 61533947 ~ 61539719 (+) True LOC110528162
XM_021609989.2 mRNA upstream 504451 61515356 ~ 61520408 (+) True LOC110528161
XM_036983712.1 mRNA downstream 59070 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA downstream 59070 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA downstream 59076 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA downstream 69586 62205171 ~ 62228018 (+) False LOC110528171
XM_021610002.2 mRNA downstream 96136 62231721 ~ 62238483 (+) False LOC110528172
TU718637 other upstream 333212 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 578112 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 773603 61235478 ~ 61251256 (+) False G631568
TU718031 other upstream 787810 61235478 ~ 61237049 (+) True G631568
TU716905 other upstream 1528430 60492277 ~ 60496429 (+) True G630515
TU719313 other downstream 3931 62139516 ~ 62139991 (+) True G632776
TU719353 other downstream 94930 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 110335 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 204436 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 793813 62929398 ~ 62929699 (+) True G633613

Expression Profile