RNA id: XM_021609997.2


Basic Information

Item Value
RNA id XM_021609997.2
length 4018
RNA type mRNA
GC content 0.49
exon number 26
gene id LOC110528169
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62159975 ~ 62175491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATCAATCAATAATTGTGATCAATTCATTAGTCCATATTGTATATACAATCTCGTCCAAACACTCGCCCATGCCCATCCCTTCTTTTCAAGTGCGCAGGGGCTTGTCCAGCGTGGTTTTCCAAACTTGTTTGCGCACGCCCAGTGCACAGACCGCCCAGTGGTTTGAGATTTTTGAAAGCCATTTCGTCCGGCAGCAGCGAATAACAGCACAGACAACAAAAAGCAAGAGAAGTTAAGACAATCATTCACacctacactgttggagctcggcaGGGCACCATGGAGCTGAATGATGGAAACCTTCAGACACTCACAGAATTTATGCGCAAAACTCTGGACCCGGATCAATCAGTCAGACGTCCAGCTGAAAAGTTTCTTGAGTCAGTTGAAGGGAACCAGAACTACCCAATATTGCTGCTTACATTATTGGAGAAATCTCAAGACAACGTGATCCGGGTGTGTGCAGCTGTCACCTTTAAAAACTACATCAAGAGAAACTGGCGCATAATTGAAGATGAACCAAACAAAATCTCAGATCCTGACCGAACCACTATCAAGGCCAACATTGTACATTTGATGTTGAGCAGCCCTGAACAGATTCAGAAACAGTTGAGTGATGCCATCAGCATCATCGGCAGAGAGGACTTCCCTATGAAGTGGCCGGACCTCTTGACAGAGATGGTGACCCGCTTCCAGAGCGGAGACTTCCACATCATTAACGGAGTGCTCCGGACCGCACACTCACTTTTCAAGAGGTATCGTCACGAGTTTAAGTCGAATGAGCTGTGGCTGGAGATTAAACTGGTGTTGGACACGTTTGCGAGTCCACTGACTGAACTCTTCAAGGCCACCATTGAGCTGTGTCAGACCCATGCGACGGACATCAACGCTTTGAAGATCCTCTTCTCGTCCCTTACtctgatttcaaaactcttctACAGTCTCAACTTCCAGGACCTTCCTGAGTTTTTTGAGGACAACATGGAGACGTGGATGTCTAATTTCCATAACTTGTTGACCTTGGATAACAAGCTACTACAAACAGATGATGAAGAGGAGGCAGGTCTTCTGGAGCTGCTCAAATCTCAGATCTGTGACAACGCTGCTCTTTACGCCCAGAAGTACGATGAAGAGTTCCAGCCTTACCTGCCTCGCTTTGTCACTGCTATCTGGAACCTGCTGGTCTCCGCTGGCCAGGAGGTCAAGTATGACCTGCTTGTGAGCAATGCTATTCAGTTCCTGGCATCTGTGTGTGAAAGGCCCCACTACAAGCATCTGTTTGAGGACCAGAACACACTCACCAGTATCTGTGAGAAGGTCATTGTGCCCAATATGGAGTTCAGAAGTGCTGATGAGGAGGCCTTTGAGGATAACTCTGAAGAATACATCCGAAGAGATCTTGAAGGATCAGacATAGACACTCGGCGCAGGGCTGCCTGTGACTTAGTGAGAGGCCTGTGTAAGTTCTTTGAGGGCCCGGTCACAGCCATCTTCTCTGGCTATGTGAACTCCATGCTGGGGGAGTATGCCAAGAACCCAGTGGTGAACTGGAAGCACAAAGACGCTGCCATCTACCTGGTCACATCTCTGGCCTCTAAAGCCCAGACAGCGAAGCATGGTATCACTCAGGCTAACGAGTTGGTGAACCTCACAGAATTCTTTGTGAACCACATTCTCACAGACCTCAATTCCCAAAACGtcAATGAGTTTCCAGTGTTGAAGGCTGATGCCATCAAATACGTCATGATCTTCAGGAGtcagTTGCCCAAAGAGCAGCTGCTGCAGGCTGTCCCTCTGCTGGTTGCCCACCTACAGGCGGAGAGCACAGTGGAGCACACCTACGCTGCCCACGCCCTGGAGAGACTCTTTACCATGAGGGGCCCCAACAACTCCACACTTATCACTCCTACAGAGATGGCCCCCTTCACGGAACAGCTGCTCAACAACCTGTTCAAAGCCCTGGCTCTGCCTGGCTCATCAGAGAACGAATATATCATGAAAGCCATCATGCGCAGCTTTTCCCTCCTGCAGGAGACCATTGTTCCTTACATCCCCacactgattggccagctcactCACAAGCTCCTCCTCGTTAGCAAGAACCCCAGCAAGCCTCACTTTAACCACTACCTGTTTGAGTCCCTGTGCCTGTCTATCCGGATCACCTGCAAGGCCAACCCTACCACTGTGGGCAGCTTTGAGGAGGCCCTCTTCCCAGTCTTCACTGAGATCCTACAGAATGACGTACAGGAGTTTGTGCCCTACGTGTTCCAGGTGATGTCTCTGCTTCTGGAGATCCACACCAGCTCCATCCCTAACTCCTACATGGCCCTGTTCCCCCACCTGCTGCAGCCCGTGCTTTGGGAACGCACTGGCAACATCCCCCCTCTGGTGCGCCTGCTTCAGGCCTACCTGGAGAAGGGGGCTGCCACCATAGCCAGCTCTGCTGCTGACAAAATACCTGGTCTGCTAGGAGTTTTCCAGAAGCTCATAGCCTCCAAGGCCAATGACCACCAAGGTTTCTACCTGATGAACAGCATCATAGAGCACATGCCCACggaGTCCATTGTTCAGTACAGGAAACAGATCTTCATTCTCCTCTTCCAGAGACTGCAGAGCTCCAAAACGACCAAGTTCATCAAGAGTTTCATGGTTTTTATCAATCTGTATGGTGTCAAGTATGGAGCCATTGCTCTGCAGGAGATCTTTGACAGCATACAGCCAAAGATGTTTGGCATGGTGCTGGAGAAGATAGTCATTCCAGAGGTGCAGAAAGTGTCTGGCCCAGTGGAGAAGAAGATCTGTGCCGTGGGCATCATCAAGATCCTCACTGAGTGCCCGGCAATGATGGACACCGAGTACACCAAACTCTGGACCCCCCTGCTCCAGGCCCTGATTGGTCTGTTTGAGCTGCCAGAGGATGACAGCATCCCTGACGACGAGCACTTCATTGACATTGAGGACACAGCCAGTTACCAGACTGCTTTCTCCCAGCTGGCCTTTGCTGGGAAGAAGGAGCACGACCCCATCGGCGACGCTGTCAGCAACCCCAAGATCCTGTTAGCGCAGTCCCTCCACAAGCTCTCCACTGCCTGTCCTGGACGGGTCCTCTCTATGTTGAGCACCAGCCTGAATGCTGAGGCCCTCCAGTACCTGCAGGGTTATCTCCTGGCTGCATCTGTGCAGCTGGTGTGAAGACACGACAGCTTCCGCTCTGATGCGTAATGGAGACCATGACACTGCACAATGACTGGGCACTGTCTGTCGCCCATGGGCAACACCAGGACTGGGACAGACTCGCCAGGACTGAGTGGACagaagactgactgactgactttacTCATGGTGGATACTTGGACAATGGGTCAACATTTTCATCTATGAATTGGGATTTTTATGATTTTAAGTGTTAAAAGAAAATACATTTAATATGTTCCCTTTAATGAGCGCACcagaatatattttgtattttttgggggggggggggggggggggggctcagtccCTAATTGGCTTGCTGTGCGGTTGGCAAGTTGATCAAGGCTGTTGTCACCAACACAACTTTGTGAATATAATGCTTTGATATGACTTTCTGCTTGTTTGTCGATTTGTCATTTATAACAACGGCCGGTCATTGTGAATTGACAGTATTCTAGAACAAGTATTGGCCCCAAAACATtatgcttaaagggatacttaGAGATTTTGGCAATGATTTGCTCTATTTCCCCGGAGTTCGATTGAACTAGTGGATACCAATTTTAGGTCTGGTTGGTATGAAGGAatttagaggtagttttgcgaaCCAATGCTAACTAACCTTAGATACCCGTAGACTTACTCTGGGGAAGTAGAGCAAGGGCCTCATTTACAAAATCCTAAGGTATCCCTTTAATGTTTTTCTGCATGTAGCTAGTCATAGCATTGTATTTTTTGATGTGAATAAAGAGGCACTTGTATAAAACCGGTGCTGTTTAGCACTTTCAAGTGACAACTCCTGTCGATGTGACTAAGT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719491 lncRNA downstream 22117 62137519 ~ 62137858 (-) True G632933
TU719208 lncRNA downstream 144250 62015342 ~ 62015725 (-) True G632683
TU719161 lncRNA downstream 180895 61977726 ~ 61979080 (-) True G632638
TU719066 lncRNA downstream 312298 61846602 ~ 61847677 (-) True G632544
TU719003 lncRNA downstream 356208 61800678 ~ 61803767 (-) True LOC110528991
TU719518 lncRNA upstream 1430 62176921 ~ 62177177 (-) True G632960
TU719519 lncRNA upstream 2777 62178268 ~ 62178574 (-) True G632961
TU719521 lncRNA upstream 6609 62182100 ~ 62182299 (-) True G632963
TU719557 lncRNA upstream 42290 62217781 ~ 62218003 (-) True G632991
TU719558 lncRNA upstream 43004 62218495 ~ 62218734 (-) False G632992
XM_036983709.1 mRNA downstream 238836 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA downstream 238836 61800678 ~ 61921139 (-) False LOC110528991
XM_036983708.1 mRNA downstream 409994 61634197 ~ 61749981 (-) False LOC110528165
XR_002474207.2 mRNA upstream 490 62175981 ~ 62185946 (-) True LOC110528170
XM_021608282.2 mRNA upstream 169591 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 173611 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 330748 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 330877 62506368 ~ 62520518 (-) False LOC118965309
TU718974 other downstream 468331 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 960537 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 968930 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1411876 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 2076118 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 45781 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 45781 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 332728 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 831284 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1610281 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile