RNA id: XR_002474207.2


Basic Information

Item Value
RNA id XR_002474207.2
length 1616
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110528170
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62175981 ~ 62185946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaAAGGAGAAGAACCTCTAACATTCCCACTGTTGATCCAGAATCAACCGGATTACTGCCACATTGTGACACATCCCATTGACATGATGAAGATCCAGCAGAAGCTGAAGATGGAGGAGTACGATGATGTGGACCAGATAACGTCTGACTTTCAGCTCTTATTCAACAATGCAAAGGCATACTACAAGGTAATATATCCCTGCCTGTAATAACAAACACATTCACTTGCTGGACTCTTTAGGGGAGAGAAGTAATGTAATGTTGTATGAAGGAGTTTTCCTAATAAATGCCCTGTCTATGGCTTAAACCTGGAATTGACCAAATGAAAGGGAGTGTGTTGCATGTCTGTAGCCAGACTCTCCAGAGTGCAGAGCAGCCTATAAGCTGTGGGACCTCTACCTGCGCACTAAGAATGAGTTTGTCCAGCGGGGGGAttatgatgacgatgatgaggaCGGGGACGATGCACAAGATAATCCTGGAGAGTCGGATGAGAATGCACCCAGTTGCCTGAAGGAGGTCCTTGAGCAGCTGTTGGATGCGGTGGTGAAATTCTCAGAGCCCTCTGGCATTTAGTCAGTGATCTGTTCCATAAACTACCAGTGACTATTATGCCATAGTAAAGGACCCAATAGATCTGAAAATCATTTCCCAGAAGATACAGATGAGCCTCTACAGAAGTGTTAGCGCCATGGCAAAAGACATAGATCTCCTGGCCAAGAATGCCAAAACGTACAATGGGCCTGGGTCACAGGTTTTTACGGATGCCAACACCATCAGAAATATTTTTttcacagagaaagacagaaattGAGCATGCTGAGCCCATCAAATCCGGCATTCACATCAAGGTCTGTCCACTATGACGAGGGGGAGTCGGAGGCAGAGAGCATCCACCACAGCATGGACATGAGTACCCCCATCTTCCAGCTGTACGAGGCTGTGCGGGGCGGAAGGAACAGCCAGGGACAGCTTATCGCCGAGCCTTTCCTCCAGCTGCCCTCCAGgaatgactacccagactactaCCAGCAGATCAGCCAGCCCATCTCCCTGCAACAGATTAGTATTGCTTCAGGTGAGAAGTGGCTGTATGGCTGCTGGTTCTACAGGCCAAATTAAACATTCCATCTTGCTACACGCAAGTTCCTGGAGAAGGAAGTCTTCAAGAGCGACTACTTCAACAAGATTCCCATCAGCATGATActgggaaaaggtgttgtcatgtTTGTCAAGCAGTGAAAGATGTGCGACTGACCAAGGAGCAGGAGAGCCGGCTGCCGTCCCATTGGCTGAAGAGCAAGGGCGCCCATTCCACAATGGCAGACTCACTGTGGCGTCTGCAAGACCTGATGCTGCGTGACACACTGAACATCCGCCAGACGAACAACCAGTAGGACATCTGAGCCACTGCTCCCTACACTGTCAGACAGGAAATGGGTTTAGGCTCATTTGAAAATGTGTAAATGTTGTTTTGTTATGTTACGTTAATGTGGGCATTCGTTTGTAGAATGGTTAAATTAGCTTGCTTACTCTGTTCAAGCTGTTTTGTGTTTGCATTTTAATTGTTCTAACAAGTGCATTATTGTATTTAATGTTTCTGTGATGGATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719494 lncRNA downstream 9038 62140952 ~ 62166943 (-) True G632936
TU719491 lncRNA downstream 38123 62137519 ~ 62137858 (-) True G632933
TU719208 lncRNA downstream 160256 62015342 ~ 62015725 (-) True G632683
TU719161 lncRNA downstream 196901 61977726 ~ 61979080 (-) True G632638
TU719066 lncRNA downstream 328304 61846602 ~ 61847677 (-) True G632544
TU719557 lncRNA upstream 31835 62217781 ~ 62218003 (-) True G632991
TU719558 lncRNA upstream 32549 62218495 ~ 62218734 (-) False G632992
TU719561 lncRNA upstream 32826 62218772 ~ 62219069 (-) False G632992
TU719562 lncRNA upstream 32826 62218772 ~ 62219506 (-) False G632992
TU719559 lncRNA upstream 32913 62218859 ~ 62219069 (-) True G632992
XM_021609997.2 mRNA downstream 490 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 493 62159975 ~ 62175488 (-) False LOC110528169
XM_036983711.1 mRNA downstream 1526 62159975 ~ 62174455 (-) False LOC110528169
XM_036983709.1 mRNA downstream 254842 61800678 ~ 61921139 (-) False LOC110528991
XM_036983710.1 mRNA downstream 254842 61800678 ~ 61921139 (-) False LOC110528991
XM_021608282.2 mRNA upstream 159136 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 163156 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 320293 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 320422 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 352387 62538333 ~ 62589746 (-) False slc4a8
TU718974 other downstream 484337 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 976543 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 984936 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1427882 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 2092124 60083046 ~ 60083857 (-) True G630747
TU719566 other upstream 35326 62221272 ~ 62221678 (-) False G632994
TU719571 other upstream 35326 62221272 ~ 62222050 (-) False G632994
TU719986 other upstream 322273 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 820829 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1599826 63785772 ~ 63792780 (-) False LOC110528212

Expression Profile