RNA id: XR_005052627.1


Basic Information

Item Value
RNA id XR_005052627.1
length 7442
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110528171
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62194655 ~ 62228018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACAGCCACATATGATAGTCTGTTTACAAACTTCAATTATCTGGAAGAAGTTTCTTGTTTTTTCCCTCGCCAAATTGACTGCTATTTTGAAACATccatatatatttaaaaaaaacattccatatatttgtttttctgctcgCGCTGTCGTTATGCGGAAAGAGTGCTGCTCTCGTTGCTATGCGGCGCCGAGACTGTAGCACTGTTACCAGGGAGGGAGGCAGtaacaggggtgtattcattcgtCCAATTTCGTTGAAAAACGGTTGGTTTCTCAAGTAAACGGTAACAACCCTAAAGGAAGCAAACGGAACTAAACGTGGAGGGACCTACCTGGAATTGTTGAAATATTAACTCTTGTTTTCGAAGCACAACGTTTTGTAACAGAatccgactaatgaatacactcCTGGTCGCGTTGTATGACGGGAGTGTGGCGCCTAGCATAGGCTTCGTCGTGCGGCTATGTCAACGATTTGATTTGTAATCGAAAATTAAGATACTACACGACTGGCTATCCTATTTCCTTTTTAATGTGACAATTGCTCAATTGATTGCACTTAGTTATACATCAAACCAAGTTGAATAGCGTGGGATTGTTTTTACGTGGTAAGGTGAAGTCGGAGTGGGGGGGACGGGGCAGAGTGGCTAGTCGGGGCGGCGGATGAGTTCGGAGCATTGCCCGTCGTCGCCGCAGCAGAAGGAAAGGGTCAAGCCAGCATTGGACAAACGTGAACAAGGGGAGATAACATCGAAAACCGTGAAGGATCAAGGCGGCATGGTCACCACAAAGGGAGCAGGGCTAAACCCCAATGCCAAAGTCTGGCAGGAGATCCCTGTGCCCCAGAGCCAAGTCCCAGAGGATGCCACGGAGGGCACCCACTGGCTAGAGACTACCCCCACTTCTGCTGATGTCACTGAGGGTTATTCAGAGGTTCCCCCAACTGAGGATAAGGGGTACGGCACGGAGTACTCAGACCCCTCGGACAGTAGTGCCCGTTTACCCACAGAGGGTGTACTGAACGGCATGGATCCCCCTGAGCTGGGGTACCCCCTCTATGACTCTGTGACTGAGTCAGCAGtggaGGAACAGCAGCCACTCTCTGAAGAGAGCCTGAGAGAGTCTCTGAAGAAACAGCTGGAGTTTTGCTTCTCAAGAGAGAATCTGTCCAAGGATCTGTACCTGATGTCCCAGATGGATAGTGATCACTTTGTCCCCATCTGGACCATCGCCAGCATTGAGGGCATCAAGGTCCTCACTACCGACATGGACCTCATCCTGGAGGTACTACGAGCCTCGCCCATGGTGCAAGTTGACGAGATGGGGGAAAAGGTTCGGCCCAATCACAAGCGCTGCATCATCATTCTGAGGGAGGTGCCAGAGACCACACCTGTAGAGGAAGTGGAGGCCCTCTTTAAGAATGAAAACTGTCCCAAGGTGATGAGTGTTGAATTTGCGGCCAACAACAACTGGTACATCACATTCCAGTCGGACACTGATGCACAGCAGgcCCACAGATATCTAAGGGAAGAAGTGAAAACGTTTCAGGGAAAACCCATCATGGCTCGTATCAAGGCCATCAACACATTCTTTGCGAAGAATGGCTACCGTAGTGTACCGAACTCCAGTGTGTACAGCCAGCAGGGCCAGTCCCAGTATAACTCAACACACCTCTACATGCAGCAGGTGTTCAGCCCCCAGCAGCAGTACCCACTCTACCCCCTGGTGCCACCCACCTGGAACCCATCGCCTGCCCCTTACTTCCAGACCCCGCTGGCCCCGTTCCCCAACAATGGCTTTGTGAACGGCTTCAGCACCCCTGGGAACTACAAGACTGGCACCAGTCCCTTGGGCCTCGGACGACCGCCCTTCAACAGAAACCGTGTCCCCCTCTATTCTAGAAAGAATGTAATCAATGCCTTCAGGAACCACGCGAAGAGCCAGCCCCGGCCATGTGACGagacccctcctccctctgttacCCCCGTATCCCCCCTGGTGGATTGCCTGTCGGGCCCCTCCAGCGCTCTTCCTCCCCGGGCGGCAGGGGCTCCCCTGGGTAGCACCCCCGAGCCTGGCCCTGTGCCCCCCAACCTCAGGGACACCCTGCCACTGGCTGCAGAGGGGATGCCCAATGGAGACCTGGGCATTGCTGGCAGGGGCAGGAGAGGCAGCTACAGAGGGAtgcggaggaagagagaggacgagaggatCACGAGGCCCATCCCTCTGAGCGAGATAAAGGTTCCACAGCCCAAGTTTGACCTGGCGACCTCCAACTTCCCTCCTTTGCCTGGGTGTGTGGTCAGCATGCAGGGAGAGCCCGTGCTAGAGACTCGCATGTCTGATGTGGTTCGAGGCCTCAAGGTGACCAGCGACAAGCCTGATGTGAATAAGGAGTCTGTGGCCCCTCCTGCTAGTGCCCAAAAGGAGGCTGTGAGTGCGCCCAGTCAGGTCGTGCCGGCCCACAAACCCCCCACCCCTCTGGTTGTGGAGCCCCCTGTTCCAAGTGTTGCTCATCTGGTGAAGAAAGTGGAGAAGCCTGAGCCTCATGTCCAAAAAGAGATGGCTCCACCCCCCACACCACCCTCTTCTCTGCCAACCCACTCACAGCCCGCCGCTGCAACCAAACCTACGCCCACCCACAGTCAGTCCATCTCCACGGCAACACCATTTCCCGCCACTACCACACCTGCACCGGAGTCAAGGAAACTGAGCTATGCTGAGATGTGCAAGCGGCCAGCCACCCAGCCCCCAGCGCCAAGCACCTCCCCAAACCCTCCCACCTCCCCAGCCAGCCAACCCCTGCGTGAACTGCGGGTCAACAAGGCCGACGAGCCCGCCACCTCCTCCAGCAGCGATGGGGATAGGCCTGAGAAACCCGAGCGGCCTGGAGAAGGCCAGCCCCGCCTTGATCCCCTTGGCTCATACTGTGGGGTTAATGGCCCTGCCCGATCCGGAGGGATGGGCCTAAAGTACTGGGATCAGCAGAGAGGTGCGTCCATGAGCCGCCGCATCTCCCCCCAGGGCTGGGCCAGACGGAGCGGGAAGGAACAGAACATTCCCCCCCGGTCACCAAAGTAGTTTAAACAACAACCAACAGACTaacagaaaaacaaacacaaatctatatacgtgtgtgtgtatatatatgtaaagagataaatatatatatatatatatatgtgtatatatatgtatgttatTGGATGAAAGAACACATTCGTGGTCTTCATCTTAAAGACCCCCCTGAAGCTCGGTCGGACATCCGCTGACCTTTGTTTAGGAAAGACTGCAAGCGGTAATCATTTTAAGAGGGGGCCGACACGAGTGTTACAAATCATAAACTGAAGGACTTGTTTGAAAGAATAGCGAGAGATGCTTACATGCTGCCTCACCTTGGTTAGCTTGAAGGCTGGGCCCTCCACTGCTAAATCTATGTTCATTTGATTTCTGTCAGTGGGGGATGGGGGACAAATGTACAGTAATGCCTTGTACCACCAGAATACTGGTAGTTGCAAAGgggaaaaaaggaaaagaaaagagCTGTTAGCAAATCTAGTCATTATGCGACACAGCAAAAGATGTGGACATCCACCAATATGACATCGTTATGAGTTGATACATATGATGCAATTTGTTGTTGGAGGGGTTGGCAAgtgattattttggcaaagggcTAAGGATAGttcataaaatgtgtttttatgtAGGTTGGAAGCGAGAGGGCCACATGGTTTTAGAGAAGTGCCTGTTTTGAACTGTTCTGAGAGAGAGTGATTTGGGAAGCCTGTCAAGCTGCATTTTCTTTTAGGTGAAGAAACAGTCTTGGATGCCTGTCAGCCAAGAGTCTGGAATTATTTTGTGTTCAGAATCAATGGGAAAATATTAATTTATTAGAATCAATGATTTTATTTTCACGGTTGATGGACACTTTTGGTATACCCTTGCTTGAGTAGGACATTAAAACCTTTACGATAATGGTGCTTGGATACCGTGCAAATGTGGGGAAAAGTTTGGATAGTCAGGCTGTCGGTCACTGAATTATATTTTCCACTCCATGTCCTATTACTTTGAAACATATGGTTAAATGTTTGAGTTGTTGGTCCCAACTGTCTGCCAATCCTGTTTAGTTAAAATATGCTTTGGTTGGTTAATGACGATTGCGCCAACCATTAGTGCATAATCTCTCCATCCAGGTTCAAGTTCAGTAGGCGCAAGGTACTCTCAGAAGTTTTCCTATATGAACTGCTTGCTTTTGTTTTTTTAAGTggtttaagttttttttaaaatgttttttaagtGGTTTGCTACAGTGTGTTATGAACATGACCCACCAATCCATTGGTTGGGATTTGAGTAGATCAGGAAGTGTTGTCATGGGTAACAGCTCATGAGAAAGGGAGGAGTCTTCCCTTAGTGAAGGTATTTGGTAGTTGAGGCAGTCAGCACTCGCATTGTAGACACCTGACACGTTCACAGTTATcatgaatttgaccattttataCGTAGCCTTTTTAAAGGGGcagtctgcagttgctacattcaTTATTGGACCTATTATTAATTTATGTACCAATTTGATTCTTCAAGTATCGAAGCTTTGTTccactgtcataccccatcagaacccaaaatataagcctgttttactccaatgtttgtaaacaaagtaaatgcaGACTAAatctatatagcctcaaaacatggttacaactGTCATTTTTATGCATCCATAGCTCAGTCTATGAATTTGAGCtgttacatttctccaaccccatccctcagctttttactgtAACAGGGTAGGGAGAACGctttgtttcaactgctgattgtcaTTTTAAGAAGAGTAGTTTTAATTATTTGTGTCTTTCATAAAAGTTTAACCTGTTGTATTAATATGTCTAATTAATTGTACCTATGTGGTCAAATGCAGGATACCGGCGTTAACATATACCTTCCTATTTATGTCTTGATGGAACAGGTGGTCTTTATCATCAAATAGAAACCTTTCCACCCCAGATATCTGGCCATTTCAACATGCCATCATATCTGTGCAACATGTTCCAGAGTAGTCTGCCATGCATTTTGGTAGCTCTTGTATCATGTAGAATAGGTTAGATGGTATTTTAGAGAATAGTAATGGGATCCCAAGCATGAAACTAGTCTTTGGTACTATGTATTCGAGCTTGCTCATTTTAAAATGGCCTGAATTCTGAAGTCAAGTAAACGTACTCAGTTCTCATTCTCTTATTTGTTGGCATCAGGAATTAATCTATAAAGGAGCTTACTGGTTTAGAGCAGCGATCACTggaattttacatttttaatgcaaataaactttattttttaaaacttttttaaaataaatttgtCAGTAAAGTTCTTCCCCAGCAAGAGTCCGGTTAGTGTTCTGACTTCTCAATTTGAGTTGATAACATGCAGTACCGAACCTGTCCCAGTATGAGATTAGGGGTGGCCAGTGGAGACTTCCAGGTGTGGTGTTGGTAGGTGTTTAGTGCTTATCGTGTACAGAGGGCTGTTTTCTTGTCCGTGAAATGCTGTCGAACTCTGATCATGTCCGTTTTGGGGTTATCCTTTTTCAATGTTGCCGTTGATTCATTGAGCAGAGATTCTGAAGGGTGATAATGATGAGTCACGTTATTTTGGGATGGGGTTGAGGGCAGAGCGACTGTCGGATATTAGAGTTTTGGTGTCTGGCTAACTCATAGGATTATGATTTAGCTGCTTTTTTCCCTTGTACATTTCACTTTTGGATTTTCTCTTTACTGTCTTAGTTTTCTTTTGATTGAAGATTTTAATGCATATCTCACGATTGTTTTAAATTCCGTACACATCCATTGTTTGAAAAATGGAAGTTTGCGTAATATTAGGAGAGTTGACTTGACATGGGGAGCATCAACCTTCAGATCTGTTCCTTTTCTATGCGCTTGCAAACTCATAATTCAGCCTTTGTGTATTAATGGATTGAACACTATCCAGaccataaatgtatagagataaTTATGtgaaaataactttttttgcatGGACATtgtcattttaaagtagtcaactgggtggggattcctatggatTGGGAGCAATCAACCAATTATCAGAGCATTGACCGCCAACTAGCGGCTACAATAAATGAATTACTCAAGATTTGTTTCTAGACTTCAACACTGTAGCTGGTGGTAAAATGCCAATTTTAGCTTTACACTTTTTTCCAATATcagaagaaaattgactactttaaatggagatggcctcattGGCACAGATACAACATTGTGATCTCTATGATCCAGACCAAAGTCAAGCAGGCAAAAAGACAACCTTGGGAACTCGCTCCAACACAACTGTTTCTGGGTGGGATGTGGAGAACTCGTAACCCTCCTACTGTTGGACGGAAAAGCTGTCAGTTAATTGATAATGCTCCCTGTCTCTTGATTGGCCAGTTATGCTTGATTAATGTAGTCCTATTTGAGCGAAGGCCACTTGTGTAGGTGGTCTGAATGTTCTTGTACAGATTTTGCACCTAGAAGGCTAATCTTTggtcaggtttttttttttttatccctctATTAGTAAGCACATTTTAGATTTGAGTAAATCTTTTGAAAGAGTTCCTCAGTTTGACTTTAGTTTTTTTATGTACTCTGATGTACCCTTTTTCTTTCAAtgcatttaattttttttgtctttttcccaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtatttcCAAAACTGTTATCTGATTTGCTACTTGGGTAAAGTGAAAATTCGGTGCACTGCCTGGGTGCTAGCAGTGCAGTAACATGTTATCTATCTAACCACTGGGcctatgttgttgttttatatttttacatCTATTAATGGCTAAGTTAAGAGCAGCTAGTGGTGTTGTCGAATGAAATGCACTAACTTTTGTTTGAAAATAATCTCTGAATCCTGTAAGGTGTAAAATCATTTTAGATGTCTACATTGAAGAAAAGGTGTTTAGCAGGTTTGCTGAAATTATTACAGGAATAGGGTTTTATTTTTCTTTAACTGTTTTGATTAGTTTTTGTAGCACTTCCCTGCTGGGACAAAGGCGTTGGAGGGGGTGCAGCTGGGACATGGTAACATACGAGGGTGGGATGTGAGACACTGAATTACTGATTTAATAGATGTCTGAACAAAAACTTAAAAGAATAATAAAGTACAAATATTTCTTGTTTTTGCCTTAGATGCTGATTCTGGGTCCTGTGCTTGCAATGATTTTGCCGTCTGTGTATTTCTAAATGTTTTGTGTGCGGTGCTCTGTGGTCTTGTCCCCGACATctgtgttaagtgtgtgtgtgtgtgtgtccaccagttATACTTTTAACAGTCTCCTTTCTTCATGTCCAAATAAAAGTTTCAGGCCAAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719340 lncRNA upstream 16894 62177540 ~ 62177761 (+) True G632796
TU719295 lncRNA upstream 86181 62107342 ~ 62108474 (+) True G632758
TU719288 lncRNA upstream 95394 62095087 ~ 62099261 (+) False G632752
TU719287 lncRNA upstream 95937 62095757 ~ 62098718 (+) True G632752
TU719257 lncRNA upstream 139423 62053802 ~ 62055232 (+) True G632724
TU719367 lncRNA downstream 25071 62253089 ~ 62255650 (+) True G632823
TU719369 lncRNA downstream 25677 62253695 ~ 62256246 (+) True G632824
TU719354 lncRNA downstream 93126 62321144 ~ 62324085 (+) True G632810
TU719415 lncRNA downstream 115479 62343497 ~ 62343731 (+) True G632858
TU719890 lncRNA downstream 269464 62497482 ~ 62497894 (+) True G633264
XM_021609995.2 mRNA upstream 59070 62024859 ~ 62135585 (+) True LOC110528168
XM_021609994.2 mRNA upstream 181320 62001553 ~ 62013335 (+) True LOC110528167
LOC110528992 mRNA upstream 198357 61971954 ~ 61996298 (+) True LOC110528992
XR_002474206.2 mRNA upstream 487329 61699972 ~ 61707326 (+) True LOC110528166
XM_021609990.2 mRNA upstream 654936 61533947 ~ 61539719 (+) True LOC110528162
XM_021610002.2 mRNA downstream 3703 62231721 ~ 62238483 (+) False LOC110528172
XM_021610004.2 mRNA downstream 3707 62231725 ~ 62238483 (+) False LOC110528172
XM_021610003.2 mRNA downstream 4655 62232673 ~ 62238483 (+) False LOC110528172
XM_021610000.2 mRNA downstream 4907 62232925 ~ 62238483 (+) False LOC110528172
XM_021610009.2 mRNA downstream 4909 62232927 ~ 62237906 (+) False LOC110528172
TU719313 other upstream 54664 62139516 ~ 62139991 (+) True G632776
TU718637 other upstream 503008 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 747908 61386032 ~ 61446747 (+) True LOC110528160
TU718026 other upstream 943399 61235478 ~ 61251256 (+) False G631568
TU719353 other downstream 2497 62230515 ~ 62231349 (+) True G632809
TU719361 other downstream 17902 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 112003 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 701380 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1392335 63620353 ~ 63621531 (+) True LOC110528206

Expression Profile