RNA id: XM_021610003.2


Basic Information

Item Value
RNA id XM_021610003.2
length 2245
RNA type mRNA
GC content 0.55
exon number 13
gene id LOC110528172
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62231721 ~ 62238483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAAACATTAGACTTGCTCGTGTTCAGATATCAAGATGTTACCGAAAATACTTTGTCGTGGAACAATTGACCTTCTGTCACATTTACCTTCCCCATTCTGAAATACTTATTTGACGCGCCTCAAATTTTGTCAGTGccctagccagctagctagcctgTGTGACTGGGTGTTGTGTACAGCTCTTTGTGTGAGATGGGGGACGATCGACCTTTTGTGTGCACCGCCCCAGGCTGTGGCCAGAGATTTACTAATGAAGACCATCTATCGGTCCACAAACACAAGCATGAGATGACCCTGAAATTTGGTCCTGCCAGAACTGACTCCGTCATCATTGCAGacCAGACCCCCACACCCACCCGCTTCCTGAAGAACTGTGAGGAGGTGGGTCTGTTCAACGAGCTGGCCAGCTCCTTCGAGCAGGAGTTCCGGAAGGCCCATGAGGATGACCAAAGGAACAAAAACCCGCTCACGGCCCCCCAGCTTCCGGCCCCACCCCTACAGACCCCCTCTGGGGTGAAAGAAGAGGATGAGGGGCCTCTGGAGGTTGACTCCTCCCCCCCAGGCAGTCCTGACTCCACCTCCAGCATGTCGGACAGCAGCAAAGAGCCAATGGTGAGAGGAAAGGAGACTCCTCCACGGCCGGTGGTGAGCTCTGCCCCCACGCCAACTATTGTACGCCCAGGGTCCCTTCCCATTCACCTTGTTTACGACCCCCTGCACCCGACTCTGCCCTCGCCAACCTCTGTCATCACACAAACCCCGCCCTCCAACAGACAACTGGGCTCTCCGACAGGTTCCTTCCCGCTGGTAATGCATCTCCCCAACGGACAGAcagtccctctcctccccagcccAAATATGACCTCGGTCATATCTCTGGCGAGGCCGTTTAATTTGGTGCCCAACATCCCTGGGATTCCAGGCCCTCCGATTGGTGGGACCAGCAGTGGCTCCTCCTCCCCATCTGGGTATAGTCTACAGTCAGAGGCCAAGATGAGGCTGAAGGCAGCGCTGacccaacaacagcagcagcatggCCCGGGGGCTCAGAACGGGGCTGGAGAGGGCCCAGGGGGGGCAGGTTCCAGCCCCATTGTCCCCCAGAGACATGAACAGAGCCAGCAGCCCTCGCAGCACTCTGACACACCCTCTCCCGCACAgccacagCAAACCAGCAGTGGCTCCTCCTCTCCATTTGGGTATAGTCTACATTCAGAGGACATGATGATGTCCCCAGCCCAGCCCACAGGTGGTAGGAGGCGGCGGGGTGCGGAGGTTGACCCAGACGAGAGGAGGCAGCGCTTCCTGGAGAGGAATAGGGCGGCGGCTTCTCGCTGCCGACAGAAACGCAAGGTGTGGGTTGGCTCTCTGGAGAGGAAGGCAGAGGACCTGGCTACCATGAATGTTTCTTTGACCAATGAAGTGGGTCTGCTGAGGAACGAGGTGACCCAACTGAAACAGCTGCTGCTGGCCCACAAAGACTGCCCTGTCACTGCCATGCAGAAGAAGTCTGCCTACGTAGctgcAGGAGTAGAGGAGAACTCCAGGGACCCCCCCTCTGAGCCTATGGGTTCCCCAGCCCCGGTTATCCAGCACGGGCCTTCGCCCCTTGCCCCCAGCCCTGGGGCCATCACCGTCAACGGGCTGAGCGTCCGCGCGGCTGAGGCAGTAGCCATGTCGGTCCTGGCCGGCATGGGGGCGGCCCAGCAGGGAGGGGTCCTCATGGCCACACAGCCGCAGCCGGCCCCCAGATGATGAGCAGGCGCAGGGAGCCAGTAAGAACTCTACATTGGGCTTTACGAGGCTGGACTGGCACAATGATGTGTgcaagagattgaaagagagaaagggacctGATTTGAAATCTGAAATTCCACCTGTTGATAGTACTTCTCACTCCCCTCCCCATCTTTCTCCATCCTACGCTCTATGACCTTGGACACACTTGATAGCCTCACAGCCAATGATAATCACTGAACAGACTGAGTAGTCCTGCCTCTTGGGCCCATTTTCTGATTGATCCTAGCTTGGATGCACTGTCActgtctacagttgaagtcggaagtttacatacacttaggtagtAGTCACTAACTTGTTTCTCAACCACTCCcaacatttcttgttaacaaactatagttttggaaagtcagttaggacatctactttgcatgacacaagtcatttttccaacaatttttttacagacagattatttcatttataattcactgtatcacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719316 lncRNA upstream 4665 62223745 ~ 62228008 (+) False LOC110528171
TU719317 lncRNA upstream 4665 62223745 ~ 62228008 (+) False LOC110528171
TU719318 lncRNA upstream 4665 62223745 ~ 62228008 (+) True LOC110528171
TU719323 lncRNA upstream 13927 62218495 ~ 62218746 (+) False G632780
TU719367 lncRNA downstream 14606 62253089 ~ 62255650 (+) True G632823
TU719369 lncRNA downstream 15212 62253695 ~ 62256246 (+) True G632824
TU719354 lncRNA downstream 82661 62321144 ~ 62324085 (+) True G632810
TU719415 lncRNA downstream 105014 62343497 ~ 62343731 (+) True G632858
TU719890 lncRNA downstream 258999 62497482 ~ 62497894 (+) True G633264
XM_036983712.1 mRNA upstream 4655 62194655 ~ 62228018 (+) False LOC110528171
XR_005052627.1 mRNA upstream 4655 62194655 ~ 62228018 (+) False LOC110528171
XM_036983713.1 mRNA upstream 4655 62194661 ~ 62228018 (+) False LOC110528171
XM_036983714.1 mRNA upstream 4655 62205171 ~ 62228018 (+) False LOC110528171
XM_021609995.2 mRNA upstream 97088 62024859 ~ 62135585 (+) True LOC110528168
XM_021610012.2 mRNA downstream 3502 62241985 ~ 62318806 (+) False LOC110528174
XM_021610010.2 mRNA downstream 3502 62241985 ~ 62319111 (+) False LOC110528174
XM_021610011.2 mRNA downstream 3502 62241985 ~ 62319111 (+) False LOC110528174
XM_021610013.2 mRNA downstream 3502 62241985 ~ 62319111 (+) False LOC110528174
XM_021610014.2 mRNA downstream 3502 62241985 ~ 62319111 (+) True LOC110528174
TU719353 other upstream 1324 62230515 ~ 62231349 (+) True G632809
TU719313 other upstream 92682 62139516 ~ 62139991 (+) True G632776
TU718637 other upstream 541026 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 785926 61386032 ~ 61446747 (+) True LOC110528160
TU718031 other upstream 995624 61235478 ~ 61237049 (+) True G631568
TU719361 other downstream 7437 62245920 ~ 62329061 (+) True G632817
TU719409 other downstream 101538 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 690915 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1381870 63620353 ~ 63621531 (+) True LOC110528206
TU721636 other downstream 1957558 64196041 ~ 64201232 (+) True LOC110528222

Expression Profile