RNA id: XM_021610011.2


Basic Information

Item Value
RNA id XM_021610011.2
length 5431
RNA type mRNA
GC content 0.56
exon number 39
gene id LOC110528174
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62241985 ~ 62319111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCATCGCTCACAGTTATGGCGGTGTCAGGGAGTCGCAAGGATGGAGTACAATCCACGTCTTGATATCTGATTTTTCTCGTTGACTCAGGAACGTGTTACCACTTTTCCTTGATTGTTACATACTACTCCGTATTATTCCTGCAACGATGGCGGGCCGAGGCGTGGATATGTCAGCACTACCAAAAGAGGTCAGGGACCAATTGGCGGAGTTGGATTTGGAGCTGTCTGAAGGTGATATCACTCAGAAGGGATATGAGAAGAAAAAGACTAAACTTCTGCTTCCCTTCTTCATGCAAACACCAGAACCTCCCCCCCCTGCCTATGACGCACATGCTCCTGGTCCTAGCAACGCCTCTGGCTCCACCCATGTCAGCGCTCACACACAGGCTCCTCCCCCCAGCTCCTCTTCTCGCTACCGTGATCGCCGCTCCCGACGACCGCACCGCAGCGGAGGGACCAGGGATGACCGCTACCGATCAGATATCCACACAGAGACGGTACAAGCTGCGTTGGCCAAACATAAGGAGGAGAAGATGGCACTGCCCATGCCCACCAAACGCCGCTCCACCTACGTCCAGTCGCCCGTCATGAACTGCACCCCACCAGGTAGCGTAGGACTGACCCCTTCAAATCAGCCTGACTGCTTCTATTTCCTCAGGAACAGCCTACACTCGTCGTCAGGTTCAGAGAATGAGAGTGCTCTGCTGAGGCAGTCGTCAGTGGGAGCCGATTTGGAGGCTCTGGACACTCCCTCTCTGCTGCAGCCCCCGAGTCTGCAGAGCCCTGACTCCTGGATCAACCACTCTGTCCAAGGCTcgtccacctcctcctctgcctcctccaccCTGTCCCATGGAGAGGGCAAGCCCCAGCCTCAACCATCCCAGCCCCAAGCCCAGCCCCAGTACAAGCCCCAGTACCAGCCCCAGTATCAGCCCCAATATCAGCCCCAGTACCAGCCGCAGTACCAGCCACAACTACAGCATCCAGTCATAGCTGACATGCTGGCTCACGCACGTATCGGCCCTTCAGAGAACAGTGATGTGACAACAGCGGCCCCCCAGGCCAGGGACTTCTCTCAGGTGGACCGGCCCAACAACCCTCCCGTGGTCCGGGGGATGAGCCGCGGACAGAGTCGCTCCGGCATGATGGAGACAGCCGACGGTGTCCCGGTTAACAGCAGGGTGTCCACTAAGATTCAGCAGCTGCTCAACACCTTGAAGAGGCCCAAGAGGCCCCCCCTCAGTGAGTTCTTCATGGACGACCAGGAGGAGATCGTAGAGGTGCCTCAGCCAGACCCCAACACCCCGCGGCCAGAGGGACGTCCGATCATCCCAGTGAAGGGGGAGCCCCTGGGGGTGGTCACTAACTGGCCCCCTGCCCTCCAGGCTGCCCTGGTTCGCTGGGGGGCCACACAGGGCAAGAGCCCCGCCCTCACCGCCTTGGACATCACTGGCAAACCcctgtacacactgacatacGgaAAGCTGTGGAGCCGCAGTGTGAAGCTGGCCTACACCCTCCTCAATAAACTGGGGCCCAAGAACGAGCAGGTCCTCAAGCCTGGGGACAGGGTGGCTCTAGTGTACCCTAACAGTGACCCTGGGATGTTTTTGGTGGCCTTCTATGGCTGCCTGCTGGCTGAGGTCATCCCTGTCCCTATAGAGGTACCTCTGTCTCGCAAGGATGCAGGCAGTAGTCAGGTAGGCTTCCTGTTGGGCAGCTGTAGTGTGAGTTTGGCTCTGACCAGTGAGATCTGTCTGAAGGGACTTCCCAAGATGCCCACCGGAGAGATTCTACAGTTTAAAGGCTGGCCTCGGCTAAAGTGGGTGGTGACAGATTCCAAGTACCTCACCAAACCTGGCAAGGACTGGCAGCCCCACATCCCTACAGCGAACACTGACCCTGCATACATAGAGtACAAGGCTAGTAAGGAGGGCACAGTGATGGGTGTGGCTGTGTCTAAGGTGGCCATGTTGACCCATTGCCAAGCACTGACCCAGGCCTGCAACTACTGTGAGGGTGAGACACTAGTGAACGTTCTGGACTTTAAAAAGGACATGGGCCTGTGGCATGGAGTTCTCACGAGTGTAATGAACAGGATCCACACCATCAGTGTGCCCTATGCTGTGATGAAGGCTTGCCCTCTCTCCTGGGTTCAGAGGGTCCACATACACAAAGCGCGCGTTGCCTTGGTGAAGTGTCGTGACCTGCACTGGGCCATGATGGCACACAGGGAACAGAGGGACACCAGCCTGGAATCACTGCACATGCTCATCGTTGCTGATGGAGCCAACCCCTGGTCAGTGTCATCCTGTGATGCCTTCCTCAACGTGTTCCAGATCCACGGCTTGAAGCCAGAGGTCATCTGTCCCTGTGCCACCTCCCCTGAGGCCATGACGGTGGCCATCCGCAGGCCGGGGGTGCCGGGGACGCCCCTCCCAGCCAGGGCCATCCTCTCCATGGGGGGTCTAAGTCACGGGGTCATCAGGGTCAATGCGGAGGACAAGAACTCTGCCCTCACTGTGCAGGACGTGGGTCACGTGATGcctggagcTCTGATGTGTATAGTGAAGCCTGAAGGGCCTCCTCAGCTGTGTAAGACAGATGAGATAGGGGAGATTGTGGTGAACTCTCGTGCCGGAGGCAACATGTACTATGGCCTACCAGGAGTCACCAAGAACACCTTTGAGGTGATTCCTGTCAATACTCTTGGTGCTCCTATTGGAGAGATCCCCTTTGTGAGATCTGGACTCCTAGGCTTCGTAGGACCTGGCAATCTGATATTTGTGGTGGGGAAAAACGAAGGCCTGCTGATGGTGAGTGGGAGGAGACACAATGCTGATGACTTGGTGGCCACAGCACTCGCCGTGGAGCCTGTCAAGACTGTGTATCGCGGAAGgattGCGGTGTTCTCTGTGACGGTGTTCTATGATGAGAGGATTGTGGTTGTGGCAGAGCAGAGGCCAGATGCCAGTGAGGAGGACAGCTTCCAGTGGATGAGCCGAGTACTGCAGGCCATTGACAGTATCCACCAGGTGGGTCTGTACAGCCTAGCCCTGGTACCTGCCAACACGTTACCCAAGACCCACCTGGGAGGGATCCACATCTTTGAGACCAAGCAGAACTTCCTGGACGGCAACCTGCACCCCTGTAACATCCTCATGTGCCCCCATACCTGTGTCACCAACCTCCCCAAACCACGGCAGAAACAGCCAGtgggTGTGGGTCCAGCCTCCATCATGGTGGGGAACCTGGTAGCAGGGAAGAGGATAGCCCAGGCAGCAGGCAGGGATCTGGGAATGATCGAGGACCAGGACCTGGTCAGGAAGCTCCGTATGTGGCCTACTATCATGcaCCAGTTCCTGTCCGAGGCTCTACAGTGGAGGGCACAGACTGATCCAGACCACTGTCTCTATGTGCTGCTCAATGCAAAGGGTCTAGTTGTATCCACAGCAACGTGTGTGCAGCTGCACAAGCGGGCGGAGAAGATTGCAGCGGCTCTCACAGAGAAAGGCAGCGTCAACACCGGAAACAACGTGGTGCTACTCTACCCTCCTGGTATTGATCTGATAGCCTCTTTCTATGGCTGCCTGTATGCTGGCTGTGTTCCTGTCACTGTCAGACCTCCTCACCCACAGAACCTGGCAGCCACACTGCCCACTGTCCGCATGATCATTGacGTCAGTAAAGCTGCCTGTATCCTCACCACTCAGAACCTCATGAGGATCCTGCGCTCCAAAGAGGCTGCTGCCACTGTGAACATTAAAACATGGCCGACAATCATAGACACAGATGACCTCCCTCGCCGTAGACCCCCAATGATCTATAAGCCCCCCACGGCAGAGATGATTGCCTATCTGGACTTCAGTGTGTCTACCACAGGCATGCTCACCGGGGTCAAGATATCCCATGCGGCAGTCAGTGCTCTGTGTCGCTCCATCAAGCTGCAGTGTGAACTCTACTCCTCACGCCAAATAGCCATCTGCCTAGACCCTTACTGTGGCCTGGGCTTTGTACTGTGGTGTCTCgcaagtgtgtactcaGGGCACCAGTCCATCCTAATCCCTCCTCTGGAGTTGGAGAGCTGTCTGCCCCTGTGGCTGAGCACCCTGAGCCAGTACCGGATCAGAGACACCTTCTGCTCCTACTCTGTCATGGAGCTCTGCACCAAGGGGATAGGCACGCAGACAGAGATACTCAAAGCGCGGGGGCTGAACCTGTCATGTGTGAGGAGCTGTGTGGTGATAGCAGAGGAGCGTCCTCGTCTGGCCCTCACCATGTCCTTCTCCAAGTTGTTTAAAGACCTGGGCCTCTCACCCCGCGCTGTCAGCACAGCCTTCGGATCCAGGGTCAACCTTGCCATTTGCATGCAGGGCACCACTGGACCGGACACCTCCACTGTGTATGTGGACATGAAGTCCCTCCGTCATGACAGAGTGAGGCTGGTGGAGAGAGGAGCCCCTCAGAGTCTCCCTCTGATGGAGTCTGGCAAAATCTTACCAGGAGTCAGGGTGATCATCGTGAACCCAGAGACCAGGGGACCTCTAGGAGATTCCCATctaggagagATCTGGATCAACAGCCCTCACAGTGCCAGTGGCTACTATGCCATCTATGGAGAGGAGAGCCTGCAGGCCGACCACTTCAACACCAAGCTGAGCTTCGGAGATCCCACGACCCTGTGGGCCAGGACTGGCTACCTGGGCTTCGTCAAGAGGACTGAGCTACTGGATGCCGCTGGGGATCGTCATGACGCCCTGTTTGTGGTGGGTTCCCTGGATGAGACTCTGGAGCTGAGGGGGCTGCGCTACCACCCTATCGACATCGAGACATCTGTGTCCCGGGCTCACCGCAGCATTGCAGAGAGTGCGGTATTCACATGGACCAACCTACTGGTGGTGGTGGCTGAACTGAGTGGCTCAGAGCAGGATGCCCTGGACCTGGTGCCCCTGGTCACCAATGTGGTGCTGGAGGAGCACCACCTCATCGTGGGCGTGGTGGTCATCGTGGACCCGGGGGTCATACCCATCAACTCCAGGGGGGAGAAACAACGCATGCACCTACGGGACTCCTTCCTGGCTGACCAACTGGACCCCATCTATGTGGCCTATAATATGTGAAGGGCCAGGGGGGCAGGCTGGTTATTGTATGATGGAAGAGATTCTGGCTGGTGGAAGAAAGTGGTTTGGACCAACCTACTCCACAGACAGACAATGCATATTGTACCACAAGGTGGTACAACTTGACTGTACTTGACTTGACTGTACTGTTGACCTTGACTGTACTGACCCTTGGGGAAACCACAGCTCTTTTTATGGTGCACGATGTTCAGATCTTAGCTATTTTGCATTCCAGGTCTGCTGGATTTGAAGGGGGCACTCTGTTGTGTTTTCAGACGTGTGTTTgaaaaaatgaaagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719316 lncRNA upstream 13977 62223745 ~ 62228008 (+) False LOC110528171
TU719317 lncRNA upstream 13977 62223745 ~ 62228008 (+) False LOC110528171
TU719318 lncRNA upstream 13977 62223745 ~ 62228008 (+) True LOC110528171
TU719323 lncRNA upstream 23239 62218495 ~ 62218746 (+) False G632780
TU719354 lncRNA downstream 2033 62321144 ~ 62324085 (+) True G632810
TU719415 lncRNA downstream 24386 62343497 ~ 62343731 (+) True G632858
TU719890 lncRNA downstream 178371 62497482 ~ 62497894 (+) True G633264
TU719898 lncRNA downstream 183362 62502473 ~ 62502708 (+) True G633272
TU719929 lncRNA downstream 210849 62529960 ~ 62596889 (+) True G633296
XM_021610004.2 mRNA upstream 3502 62231725 ~ 62238483 (+) False LOC110528172
XM_036983719.1 mRNA downstream 6318 62325429 ~ 62342019 (+) False LOC110528175
XM_021610022.2 mRNA downstream 6319 62325430 ~ 62342019 (+) False LOC110528175
XM_021610017.2 mRNA downstream 6321 62325432 ~ 62342019 (+) False LOC110528175
XM_021610020.2 mRNA downstream 6324 62325435 ~ 62342019 (+) False LOC110528175
XM_036983718.1 mRNA downstream 6324 62325435 ~ 62342019 (+) False LOC110528175
TU719353 other upstream 10636 62230515 ~ 62231349 (+) True G632809
TU719313 other upstream 101994 62139516 ~ 62139991 (+) True G632776
TU718637 other upstream 550338 61691281 ~ 61691647 (+) True G632146
TU718347 other upstream 795238 61386032 ~ 61446747 (+) True LOC110528160
TU718031 other upstream 1004936 61235478 ~ 61237049 (+) True G631568
TU719409 other downstream 20910 62340021 ~ 62341965 (+) True LOC110528175
TU720268 other downstream 610287 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1301242 63620353 ~ 63621531 (+) True LOC110528206
TU721636 other downstream 1876930 64196041 ~ 64201232 (+) True LOC110528222
TU722203 other downstream 1999089 64318200 ~ 64326259 (+) False G635332

Expression Profile