RNA id: LOC110528993



Basic Information


Item Value
RNA id LOC110528993
length 662
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110528993
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62349102 ~ 62349904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGACTATTTTTATGAATTTCTTTAGGCTTATTTTCAAGGTAGTAACCTTGCACCTCCAATTAATGGAGACGGTTGGCATAAATGGCATCTACAAGTGTTTCTTTCCATTTCTTGTTTACAAGATATCTTTCACCTACAACAAAAAAATGCACGACAAAAAGAAGGACCTTTTCAGCAATCTCTCAGAGTTCACCTTAGGCAATGGCCCACTTCGCATTTTGGAGATTGGCTGCGGAAGCGGGGCTAACTTTGAGTTCTACCTGTCTGGTTGCAAGGTGGTTTGCACCGACCCCAGTCCTTACTTCGAGAAGTATCTGTAAAAGAGCCTGGCTGTCAATGATCACCTAATGTTCGAAAGCTTTGTGGTTGCTTCGGGAGAGGACATAGGGGCAGTGAAAAACAAATCCGTGGACGTTGTCGTCTGTTCTGTCAACGACATACCACGAACATTGCAGGAGGCGCATCGCATATTGAGGCCTGTAAATTGGTTATCTTATTttcaaaaattgtagacctccacaaagatggactTTCGGGATGGATGTGAGGGAGTCAGGGCGACATGGAAAGATCTGGAGGCTACTGGGTTCTCTGAGCTACAACTGAGGCACCACTCAACTTCATGATCAAACCACATATTATGGGCCATGCTGTCAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719639 lncRNA downstream 44409 62304243 ~ 62304693 (-) True G633054
TU719591 lncRNA downstream 85508 62237766 ~ 62263594 (-) True G633006
TU719577 lncRNA downstream 120655 62223219 ~ 62228447 (-) False G632996
TU719578 lncRNA downstream 121091 62223219 ~ 62228011 (-) True G632996
TU719579 lncRNA downstream 125973 62222834 ~ 62223129 (-) True G632997
TU719984 lncRNA upstream 149586 62499490 ~ 62501459 (-) True G633347
TU719983 lncRNA upstream 153451 62503355 ~ 62504805 (-) True G633346
TU719985 lncRNA upstream 157094 62506998 ~ 62507384 (-) False LOC118965309
TU720071 lncRNA upstream 257208 62607112 ~ 62607360 (-) True G633425
TU720388 lncRNA upstream 267985 62617889 ~ 62618362 (-) False G633712
XM_021608282.2 mRNA downstream 1787 62345082 ~ 62347315 (-) True LOC110527134
XR_002474207.2 mRNA downstream 163156 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 173611 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 173614 62159975 ~ 62175488 (-) False LOC110528169
XM_036983711.1 mRNA downstream 174647 62159975 ~ 62174455 (-) False LOC110528169
XR_005052628.1 mRNA upstream 156335 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 156464 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 188429 62538333 ~ 62589746 (-) False slc4a8
XM_021610036.2 mRNA upstream 188429 62538333 ~ 62589748 (-) True slc4a8
XR_005052728.1 mRNA upstream 195080 62544984 ~ 62545127 (-) True LOC118965401
TU719571 other downstream 127052 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 127424 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 657458 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1149664 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1158057 61190708 ~ 61191045 (-) True G631740
TU719986 other upstream 158315 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 656871 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1435868 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1435895 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1644612 63994516 ~ 63997239 (-) True LOC110528216

Expression Profile