RNA id: XR_005052628.1



Basic Information


Item Value
RNA id XR_005052628.1
length 2430
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118965309
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62506239 ~ 62520518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagcgagagggaggggtagagtaTGAGAGCAGAGAAGGATAGAGTCCCAGAAGTGGAAAAACACTGCCTTACTGTGTGGGTCAATCTATTGGCTTCCAGATAGAACCCATCATATCAAGGAAATACAAGCATGAGCAGGTCTGTTGAAGATGCACTGGTCTCCGGAGCACGCGGCCCCCCTGTCCCAGTGGCCTGAGCAGCACCTGGATGTGTcttccaccacctcccctccctccgccCACAAACACGACTCACGTGGTTACACCACTGCAGCCGGATACCCCTGGGCCAGCGATGACATCTCTGCCCTCACCGCCTCTTCCTTGTTAAAACGCTATGCCGAAAAGTACTCAGGCCTGGAGCTGCCCTACGAAAGGCCTACCCCAGGGGCTTACTCAGAGCCTGGGGCCTTCCTGAAGAGTGAGACTGAGCCCTGGGCCCTGGAGTGTTACCCTGCGCTGGAAGCCCTGGCAGCAGGGGCCAAAGTGGGATCAGCATCAGTGGGCCTCCCTGGCACGGGCAGTGTGACGGTGGTGAACAGTAACTTGACCTCTGACCCTGGGTATAGTGGTGGTGGCTCCTGTAATGCCCCCCCCTCTCAGGACTACCCCCTCTCCTACAACAGCACCTACCTCTCCTCAGGATACTGCCTCCAACCCGGCTCAGCACTTCCCCCAGCCTCTCTGCAAACCACCCCCACCCTGGTGTCCAGCTACAACCCTACCAACCCTGTATACAACTACCCGCCAGGCTGCTACCCCCACCTCCAGACCAGCCTGGCAGCCAGTTACAGCCACAGCCACCCCAGTGCCTCCTACCTCCCCTCTGGCCTGAGCACCCCTACCCCCCTGACCCCCCGGTCCACCATGGCGGGGGGCAGCTATGGCTACCCCAGTCACAGCCTAGGGGCCAGCTCTGAGACAGGAGGGCCGCTGAAACGCAAGGCCTTTGAGATGgcggaagagggggaggagggaggagaaggagacggCTCGCGGTACAGGAAGTTCGTCAACGGCCACAGCAAGAGCCACGGCAATGGTCACGGCAACGACTACGACATAGCGGGCTCAGAAGTCCAGGCCTACAAGCCCGGCAAGCCTCTGGTGTCGCCTCCTTATGTTGGCCAGGGCGAGTACAGCCCCTCCTCAGGCCTAGGtggggagagtgggggaggaggggaacaTGGCTTTCCCCATCAGAGGCTGGCCATGAAGATGCCTGTGTCACATGCACGATCTGAGGACCCAACTGGAGGACGCTAGATCAGGCACTTgaaatgaaaactctcttgggGTCCTTCGGTTTTATTGGCATTTAAAAACCAAGTAGAGTACTTACTCTGACAAAAACTGGGGGAAAATAATAATTGGATTTTGCAATGAGAGGTCATGTGATCTAACCTGGAAGGAGAGAAAATGGCAAATTACTTGAATCCACCTCCTATCTTATATCATTTTCATTCTTAGATTTTCTCCAAAGAGTCAAGGGTCACTTTGTCCTGTATGGGTGTGGTGAGGTGGtgtgaggacagagggagggatctaGATGGATAGGGCTAAATCAGGCAGTCTGAATGGATTACCGACTGCTTCTCTCAGGATCCTATTTATTTCCCAATCTGCTACTTTGGCAGACAGTGACAttgcaatgttgttgttttgaggAGTTGCTCTCTTAATTGGAGTGGCCACTTGATATGGAAAGGACGTTTGACTCTATTACCTCCTACAGCACCATAAGAATCATAACCTTTCAGACCAAAAAGTAGAGAAGAAGAACATAATTGATGTGATGTACTTTAATAACTTGACACCACGAGCACAATGACAGCTCTTCTGAGGCTTGGTGCCTCTATACAACTCGCTTTGAAACGAatgtccccctctcccccctccccttttccctGTTTTCTTTTGACAGTGTTTCTATGttatttctccctctttctctacctctcatcACTACATTTTCATCATGTTTTCCCTTCCCTGCTTTTTCTCAGTTTGTTTCACTCACTCTTTTTCTTTTtctgttaaagctgcaatatgtaactttttgggcaacctgaccaaattcacatagaaatgtgagttatagatatgcTATGCTCATCGAAAGCAAgcctaagaagcagtagatctatTCTATGTGCTCGATTTCTATGCTTACCGGTCTTTAGTTTTTgcttcttttactttcggtttcgTACACCAGctttaaacagctgaaaatacaatagctttggttattgaaaatatatttcacagcagtttagatggtacaatgattctctacactatgcaTTGCTTATTTTGTcaaaaactgaaattaggtgaactattgtTCATTATGCACTGTTACATGCAGCTCTATCAATACATTGAAATACTTAAACCTGCAGAAAGAGATACTTaaacctgcaggaag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU719983 lncRNA downstream 1434 62503355 ~ 62504805 (-) True G633346
TU719984 lncRNA downstream 4780 62499490 ~ 62501459 (-) True G633347
TU719639 lncRNA downstream 201546 62304243 ~ 62304693 (-) True G633054
TU719591 lncRNA downstream 242645 62237766 ~ 62263594 (-) True G633006
TU719577 lncRNA downstream 277792 62223219 ~ 62228447 (-) False G632996
TU720071 lncRNA upstream 86594 62607112 ~ 62607360 (-) True G633425
TU720388 lncRNA upstream 97371 62617889 ~ 62618362 (-) False G633712
TU720387 lncRNA upstream 97475 62617993 ~ 62618485 (-) True G633712
TU720403 lncRNA upstream 100414 62620932 ~ 62621508 (-) True G633722
TU720386 lncRNA upstream 101300 62621818 ~ 62622144 (-) True G633711
LOC110528993 mRNA downstream 156335 62349102 ~ 62349904 (-) True LOC110528993
XM_021608282.2 mRNA downstream 158924 62345082 ~ 62347315 (-) True LOC110527134
XR_002474207.2 mRNA downstream 320293 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 330748 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 330751 62159975 ~ 62175488 (-) False LOC110528169
XM_021610035.2 mRNA upstream 17815 62538333 ~ 62589746 (-) False slc4a8
XM_021610036.2 mRNA upstream 17815 62538333 ~ 62589748 (-) True slc4a8
XR_005052728.1 mRNA upstream 24466 62544984 ~ 62545127 (-) True LOC118965401
XM_021610037.2 mRNA upstream 92251 62612769 ~ 62616742 (-) True LOC110528181
XM_021610038.2 mRNA upstream 126464 62646982 ~ 62822425 (-) False LOC110528182
TU719571 other downstream 284189 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 284561 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 814595 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1306801 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1315194 61190708 ~ 61191045 (-) True G631740
TU720546 other upstream 486257 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1265254 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1265281 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1473998 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1511928 64032446 ~ 64035381 (-) True G635167

Expression Profile


XR_005052628.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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XR_005052628.1 Expression in each Bioproject

Bar chart with 18 bars.
XR_005052628.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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