RNA id: XM_021610035.2


Basic Information

Item Value
RNA id XM_021610035.2
length 4013
RNA type mRNA
GC content 0.54
exon number 24
gene id slc4a8
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62538333 ~ 62589748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACATAGGCTACTTTGTTACCCCCTGAATGTGCAACTTGAAACGGGACTTTATCTTGACATCTGTTCGGTGGCAACAGCAATGCGTCGCAGTCTTTCTGCTGCCTTCTCATAATTGGCTGAACAAGCAGTGATGCTCCATCCACCGCTAACCTTGCCCTGGACCAAAGAGAGGAAAGCTTGAGGAGCGCGCGCATCAGGACGTCAAAACGCTAATAACAGAACAGGTGGAATTTGCAGCGTTTCTACGATTCTCTCTCAACTGGGAACATGTTTTCCCACACCATGTCTGTCAGAATTGGGAAGGAATGTCACCAATGAATATCTGTCAAAGAATTGACTGAAAACACCGCGAGTCTCTTGTAGCCGTCTTGGCTATCAGCTTCAGCTTCTGACTCCGTGTATAGTAGCTCACCCGTCAACTGAAAGGACGATACACGGACCCTACTATCATGCCCGCAGAAGTCAACGACCCTGAGAGCATTTTGAGCTACCAGAGGGCAGATGAGGAAGTGGTAGTGGACCAAGGAGGAACCAGCTCAGTCCTCAACATCCACTATGAGAAGGAGGAGCTAGAGGgccACAGGACTCTGTTTTTGGGGGTGAGTATGCCCATGGGTAGACAGAGCCACCGCCACCACCGCCCCCATGGCTCACGCCACCGCAAGAAGGACAGGAGGGCAGGGAATGCTACGCAGCAGgacgaggagggagagggggcctCAGCCTCTCATgACACTCCATCCCAGCGTGTCCAGTTCATTCTGGGGACAGAGGAGGATTCTGAACATGTGGCCCACGAGCTCTTCACTGAGCTGGATGAGATCTGTGTCAAAGAGGGCAAGGACGCAGAGTGGAAAGAAACTGCCAGGTGGTTGAAGTTTGAGGAGGAcgtggaggatggaggagagaggtggagtaaGCCTTATGTGGCCACGCTGTCCCTCCACAGCCTGTTTGAGCTGCGTAGCTGCCTCATCAACGGCAGTGTACTGCTGGACATGCAGGCCAACACCATCGAGGAGATCGCAGATATGGTGTTGGACCAGCAAGAGGCGTCCCATGAGCTGGACGACAGTGTGAGGCTGAAGGTAAGGGAGGCCCTGCTGAAGAGACACCACCACCAGAACGAGAAGAAGAGGTCAGGCCATCACCAGCTCATCCCTGACATGGTGCGCTCATTTGCCGATGCCGGACGCAAGCACTCTGAACCCCACATGGACAAGAGCGGTCCAACTGTCTCCCCCCAGCCTCCCCCCACCAACATAGAGGTAAAAAATGGAGCCAACCACGACAACAGCCAAGTGGACCTTAGcaaggtGGACATGCACTTCATGAAGAAGATTCCTACAGGAGCCGAGGCCTCTAACGTCCTGGTGGGAGAGCTGGACTTCCTGGAGAGACCTGTGGTGGCCTTCGTACGCCTCTCCCCTGCCGTACTGCTCACTGGCCTCACTGAGGTCCCCATACCCACCAgGTTCATGTTCATCCTCCTGGGCCCAGACGGAAAGGCTCAGCAGTACCACGAGATTGGCCGCTCCATGGCAACCATCATGACTGACGAGaTTTTCCATGATGTGGCATATAAAGCTAAGGACCGCAGTGACCTGCTGGCTGGTATAGATGAGTTTCTGGATCAGGTAACCGTTCTGCCCCCCGGGGAGTGGGACCCTTCCATCCGCATCGAGCCCCCCAAGAGTGTCCCCTCTCAGGAGAAGCGGAAAATTCCAGGGATGCCCAATGGTACGACCTGCCCTGTGGAAGAGGAGTTTCATGCAGAACATCATGGTCCTGAGCTCCAGAGAACAGGAAGATTGTTTGGGGGTCTGATCCTGGACATTAAGCGGAAGGCTCCGTTCTATCTGAGTGACTACAAAGATGGGTTGAGTCTTCAGTGTGTtgcctccttcctcttcctctactgCGCCTGCATGTCCCCAGTCATCACCTTCGGAGGCCTGCTGGGGGAGGCTACGGAGGGACGCATTAGTGCCATTGAGTCTCTGCTGGGAGCATCCATGACAGGAGTGGCCTACTCTCTGTTTGCTGGTCAGCCTCTCACCATCCTGGGTAGCACAGGCCCTGTCCTCGTCTTTGAGAAGATCCTCTTCAAGTTCTGCAAGGACTATGACCTGTCCTACCTGTCTCTGAGGACCTGTATCGGCCTGTGGACGGCCTTCCTGTGTCTCGTCCTGGTGGCCACAGATGCCAGCTCCCTGGTCTGCTACATCACCCGCTTCACAGAAGAAGCCTTTGCTTCCCTTATCTGCATCATCTTCATTTACGAGGCTCTGGAGAAGCTCATCCACCTGGGGGAACACTACCCCATCAACACCCACAGCGACCTGGACAAGCTCACCCTGGCATACTGTCGGTGTGCAGAGCCTGATAACCCCAGTAATACAACCCTGGAGCTATGGAGTCAGAAAAACATCACTGCTTCTGCTGTGCCTTGGGCCAACCTTACTGTCAAGGAGTGCATAGATCTGCAAGGCCACTTTGTGGGTACAGCTTGTGGACACCATGGCCCCTACACCCCTGACGTACTCTTCTGGTCGGCCATCCTCTTCTTCGCCACTGTCTTCATGTCAGCGTTCCTCAAAGAGTGTAAGACCAGCCGCTATTTCCCCACCAGGGTGCGGTCCATGATCAGTGACTTTGCGGTCTTTATCACCATTGTATTTATGGTCATGCTTGACTTCCTGATTGGAATCCCCTCGCAGAAGCTGCAGGTGCCCAGCAACTTTAAGCCCACCCGAGATGACCGTGGTTGGTTGATCAACCCGATAGGTCGAAACCCGTGGTGGACAGTCCTGGCTGCATCcatccctgctctgctctgcaccATCCTCATCTTCATGGACCAACAGATCACCGCTGTCATCATCAACCGCAAGGAGCATAAACTACTGAAGGGCTGTGGCTATCACCTGGACCTGCTGATGGTGGGGGTGATGCTGGCTGTGTGCTCCATTATGGGCCTGCCCTGGTTCGTGGCAGCCACCGTGCTCTCCATCTCCCACGTCAACAGCCTGAAACTGGAGTCAGAGAGCTCGGCCCCCGGGGAACAGCCCCGCTTCCTGGGCATCAGAGAGCAGAGGCTCACAGGCCTGGTCATCTTCCTACTGATGGGCCTCTCTGTCTTCATGACTGGGGCTCTGCAGTTCATTCCCATGCCTGTCCTGTATGGAGTATTTCTCTACATGGGAGCCTCATCTTTGAGGGGGATACAGTTTTTTGACCGTCTAAAGTTATTTGGTATGCCAGCCAAGCACCAGCCAGACTTCATCTACCTGAGACACGTTCCCCTGAGGAAGGTGCACCTGTTCACCATCACCCAGCTCACCTGCCTGGCCCTGCTCTGGATCATTAAAACCTCCAAGGCTGCCATTGTCTTCCCCATGATGgtTCTGGCTCTAGTGTTCATCCGTAAGTTGTTGGACCTTTGCTTCACTAAGAGGGAGCTGAGTTACCTGGATGACATAATGCCTGAGAGCAAGAAGAAACAACTGCATGACGCCTCCAAGAATGTTGACATTGAGcaggatgaGGAGATTCTGGGTACAGCAGTAGAGGATAAGACCTCAGTCCATATCCCCATGGAGAGCAGCAAGCTCCTGCAGTTCCCCAAAACACACGACCCCagGTGTGACCCTTCTGATATTAACATATCTGATGAGATGTCTAAAACCACCGTATGGAAATCCCTCAACGCCAACCAAAAGGACAGTCGCATGGGGGCTGCTAAGAAGGATTGAAATTGAAGGTCTGGAATTTATAGATCAGTGAGAGTGGAACCAGATGACTACAGAGGCTGTGAGCTACACTTCAATAAGCCAGACCCATAGGTCATAGAGCATTTCTAATGCCCCCTTGTGTTTTGGCTCATACACATCTTTAACCCAAACACCTCCTCTACAATACCGACCCCAAGACCCCAAGATTCCTAACGGCTGCTCTCAtacacccccaacacacacacattccctcaaacaaccacaaccacaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719985 lncRNA downstream 30949 62506998 ~ 62507384 (-) False LOC118965309
TU719983 lncRNA downstream 33528 62503355 ~ 62504805 (-) True G633346
TU719984 lncRNA downstream 36874 62499490 ~ 62501459 (-) True G633347
TU719639 lncRNA downstream 233640 62304243 ~ 62304693 (-) True G633054
TU719591 lncRNA downstream 274739 62237766 ~ 62263594 (-) True G633006
TU720071 lncRNA upstream 17366 62607112 ~ 62607360 (-) True G633425
TU720388 lncRNA upstream 28143 62617889 ~ 62618362 (-) False G633712
TU720387 lncRNA upstream 28247 62617993 ~ 62618485 (-) True G633712
TU720403 lncRNA upstream 31186 62620932 ~ 62621508 (-) True G633722
TU720386 lncRNA upstream 32072 62621818 ~ 62622144 (-) True G633711
XR_005052628.1 mRNA downstream 17815 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA downstream 17815 62506368 ~ 62520518 (-) False LOC118965309
LOC110528993 mRNA downstream 188429 62349102 ~ 62349904 (-) True LOC110528993
XM_021608282.2 mRNA downstream 191018 62345082 ~ 62347315 (-) True LOC110527134
XR_002474207.2 mRNA downstream 352387 62175981 ~ 62185946 (-) True LOC110528170
XM_021610037.2 mRNA upstream 23023 62612769 ~ 62616742 (-) True LOC110528181
XM_021610038.2 mRNA upstream 57236 62646982 ~ 62822425 (-) False LOC110528182
XM_036983724.1 mRNA upstream 57236 62646982 ~ 62822425 (-) False LOC110528182
XM_021610040.2 mRNA upstream 58420 62648166 ~ 62822425 (-) False LOC110528182
XM_036983725.1 mRNA upstream 58420 62648166 ~ 62822425 (-) False LOC110528182
TU719986 other downstream 17823 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 316283 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 316655 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 846689 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1338895 61198007 ~ 61199438 (-) True G631687
TU720546 other upstream 417029 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1196026 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1196053 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1404770 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1442700 64032446 ~ 64035381 (-) True G635167

Expression Profile