RNA id: XM_021610037.2


Basic Information

Item Value
RNA id XM_021610037.2
length 2803
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110528181
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62612769 ~ 62616742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCCAAAACGTGACTCATGTGACAGAGGTAGGTCACTCTGCGAGCGAGAGTCAGAGGGGTTTATTTAACACGTAGCTCTAGTGTCCTCCCCCACTTTCCCAACGCGCAACCAAGATTAGTGCATCTTCAGGGCTACCTCTTGACTGACTTCGTGGAGATCTCCGGGACAATTTACTCCCATTCGGCGacaaatataataataacaacaattgAAATATAAAGGAAAATACATTTTCTCTACATATTGTTAATCTCGAGTTAGTAGGAATACTGGACGATTTACTTTTATTAAATTTCATATGCATCCTTGAGTGAATACATTGGGAAACAAGCTTGCCCTTTCGTGATTAGTTTGGAGTAGGCCTAAAGATAATGGAAATGGAAAGGATTCAAAGGGCGCAACCCCCTCCCAAGTACCAGCAGGCTGAGCTGTCTGACATGCAAGGGATGGATTTCCCTATATATGTATACAAATCCCGTCGGGGAATGAAACGAGCAGAGGAATGCAAGGAAAACTACAAACTACCTCATCGACTTATTGAGAAGAAAAGGCGAGACAGGATAAACGAGTGCATCGCTCAGTTGAAAGATTTATTGCCTGAGCACCTGAAACTTACAACTCTTGGCCATCTGGAGAAGGCTGTGGTTTTGGAACTCACGCTCAAGCATGTGAAAGCCCTCACCACTCTACTGGAAAACCAGCAGCAGAAAATCCTCGCTCTGCAGAATGGCATGCAAATCGAGCAGTCCTCTCCCAGCCAGGAGAACAGCGAGGGGATGTTCCGCTCAGGCTTCCACGTCTGTGCCCAGGAGGTTTTACAGTACCTGGCCAACCAGGAGGGTGACGGAAACCTCACACCCTCCCACATGATCAACCACCTGCACAAGGTGGCCACTGAGATCCTCCAGGGCCCTCCCCACAGCCCCTGGCCCGAAAAGACCCCCagctaccaccaccaccaggccctGAGGGAGAAGCCTGTAGGCCAGCCCCCCAAGCCCAGCGAGGGCCACAGGAAGAACTGTGTGCCCGTCATACAGCGGGCGTATGCCCAGGTTGGCGGTGAGCAAAGTGGCAgtgatacagacacagacagcggctACGGTGGCGAGCAGGGTGAGCATCTGGCGTTGCGTGCAGGGTACTGTGGCCAAGAGAGCCATCTGAAGAGAGCCCTGGGCGAAAAGACGGCGTCATTGGGCGTCAAGCAGGAAGATGAACCTCGCCACAAACATGCCCGGGTGGAGTCATCCGATGACGAGTTTCTGTCAGGTGGAGAGTCATCCtcatcctcttcatcctcctccagcGGTCACGGCAGCTACATGAGCGCCTACTCCCCCCATCAGGCCCAACCTCATCCTCTCTGCATGCCCTTCTACCTCATCCCCCCTTCTGCTGCCGCTTATCTGCCCATGCTGGAGAAGTGCTGGTACTCTGGGGCCATGCCCATGATCTACCCTGGCCTGGGGGGCACCGCACAGGGCATGCCTAGCGACACGCATGCCCAAACTTCCCTGATTACGATATCCCCCAGGGggcactctccctctccccccaacGTGGCCCAGAGCCCCATGGACTCACCAGCCCTCCTCCAAGCGTTAAAGCCCATTAACCTGGAAACCAAAGACTGAGAGACCACTGAACAGTGTTATTGAACATAGAGACTGCTCTGCCGAGAGGGAACATGGGGGGGAACATGACTAACAGTCAGATCACCCACCATCACCCCTCTCCCCTGGTCCCTCACCCCAGAGGTCAGAAGAccgaagggagacagagagcatgCAGCTGATCTGGTCCCGGACTGGTGATATATCATCCACAGCCACACTGCTGCGAAGACAAGAAAGAGTGAAGGTGTAGAATGAAGACAGCTGAACCTGTTACCTGACCCTCTACCCTCTGAATGTTTGACTTAAAATGCATACCCCCACCAGAGCGCTGAGTGCATCGTTGACCCCACTGATCTGGACCTGCCCTAAACACACACCCTTGGTTGAATGTAAAAGAGAGGCAATCCAGGGGATGCTGCTGTTGAGGTTTCTACATGCTGATGACACTGACAGGTCTCAGTTGTAGCTGCtgccatagagacacatacacGTCCTAAATCATGTTACACCTAATGTCAACAGTCACCTTTCACCCAAAGGTCGCTGTCTATCTACCTTAGGTAACCATTGCCATCGCTGACAATACCCTTTGCCCCATTTCCTATGACAACAACAAGCGCTCTGACGAAAATAATGATCCCCACAACTGTACAGCCAGGAGCAAAGGGTACGCCAATTCACACTTTATGGAGTTAGTGATGTCATCACGTTGAGATGGATTTTCTGTCATTATTGTGTATACTTCTTGTACATCTCTATTTTTGATATGTGTCCTAATTCTCAGACTAGAGAGAGGGGTAGTAGAGTGTGGACAGTCATTTTAGTGTAAAATAAACCCTGTACATTAAACCCTGTACATACTGTAGCCCTGTGCTGGCCCTGGTCTGCGTTTTTCAGCAATCCGCTTCTCCTCAAGTCAAACCTGGTGTTTGTTCATGCTGTTGCCTTTTACTTGTGAAAAGCTGATAAAAACATCATTGGATGtttattaaatgtatttgtatgAATACTGCAGTCTAAGGAGTTGGCGAGAAGTGAATGTATATGTTTTAACAGAACATTTGTTTTTTATAGAAAGATGTACTTGGGACCTACCAGAAAGTTGTTGATGTACATACTTTGTCTAAATGGTGATATACATTATATAAGCGTATTAATAAAGTATTTTTTTCCTGTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720071 lncRNA downstream 5409 62607112 ~ 62607360 (-) True G633425
TU719985 lncRNA downstream 105385 62506998 ~ 62507384 (-) False LOC118965309
TU719983 lncRNA downstream 107964 62503355 ~ 62504805 (-) True G633346
TU719984 lncRNA downstream 111310 62499490 ~ 62501459 (-) True G633347
TU719639 lncRNA downstream 308076 62304243 ~ 62304693 (-) True G633054
TU720388 lncRNA upstream 1147 62617889 ~ 62618362 (-) False G633712
TU720387 lncRNA upstream 1251 62617993 ~ 62618485 (-) True G633712
TU720403 lncRNA upstream 4190 62620932 ~ 62621508 (-) True G633722
TU720386 lncRNA upstream 5076 62621818 ~ 62622144 (-) True G633711
TU720409 lncRNA upstream 15184 62631926 ~ 62632161 (-) True G633728
XM_021610036.2 mRNA downstream 23021 62538333 ~ 62589748 (-) True slc4a8
XM_021610035.2 mRNA downstream 23023 62538333 ~ 62589746 (-) False slc4a8
XR_005052728.1 mRNA downstream 67642 62544984 ~ 62545127 (-) True LOC118965401
XR_005052628.1 mRNA downstream 92251 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA downstream 92251 62506368 ~ 62520518 (-) False LOC118965309
XM_021610038.2 mRNA upstream 30240 62646982 ~ 62822425 (-) False LOC110528182
XM_036983724.1 mRNA upstream 30240 62646982 ~ 62822425 (-) False LOC110528182
XM_021610040.2 mRNA upstream 31424 62648166 ~ 62822425 (-) False LOC110528182
XM_036983725.1 mRNA upstream 31424 62648166 ~ 62822425 (-) False LOC110528182
XM_036983726.1 mRNA upstream 31424 62648166 ~ 62822425 (-) False LOC110528182
TU719986 other downstream 92259 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 390719 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 391091 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 921125 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1413331 61198007 ~ 61199438 (-) True G631687
TU720546 other upstream 390033 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1169030 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1169057 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1377774 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1415704 64032446 ~ 64035381 (-) True G635167

Expression Profile