RNA id: TU720390


Basic Information

Item Value
RNA id TU720390
length 706
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC110528182
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62646982 ~ 62822425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcacacaatatcccattatgacaaagtgaacattatttttgtcattttagcaaatttattgaaaatgaaatacagaaatatctcataaGTATTCACagtcctgagtcaatactttgtggaagcacctttggcagcactTACAGCAGTAAGTCTTTatgggtaagtctcttaagagctatccacacctggattgtgcaacatttgcctgtTATTCTTGTAAAATAAATATCAAGCTctatcaaattggttgttgataattgctagacaaccatgcTCAGGTCTTGcctttttggtaagcaactccagtgtagatttgtctggtagaaagcagactgaaccaggttttcctttaggattttgcctttgcttagctccattccattcatttttttatcctgaaaaactccccaatccttaatgattacaagcatacccataacgtgatgcagccacaactatgcttgaaaatatggagtggtactcagaaatgtgttgtattggattctccccaaacataactttattcaggacaaaaagtgaattgctttgtcagtttttttgcagtattactttagtgccttgttgtaaacaggatgcatgtttttgaatatttatattctgtacaaGTGTCCTTATTTTCACTGTGTCAATTAGGTtggtattgtagagtaactacactttgttgatccatcctcagttttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720409 lncRNA downstream 14860 62631926 ~ 62632161 (-) True G633728
TU720386 lncRNA downstream 24877 62621818 ~ 62622144 (-) True G633711
TU720403 lncRNA downstream 25513 62620932 ~ 62621508 (-) True G633722
TU720387 lncRNA downstream 28536 62617993 ~ 62618485 (-) True G633712
TU720388 lncRNA downstream 28659 62617889 ~ 62618362 (-) False G633712
TU720494 lncRNA upstream 163698 62811424 ~ 62812920 (-) True G633809
TU720393 lncRNA upstream 193166 62840892 ~ 62843326 (-) False G633715
TU720396 lncRNA upstream 193166 62840892 ~ 62881773 (-) False G633715
TU720395 lncRNA upstream 214802 62862528 ~ 62881773 (-) True G633715
TU720555 lncRNA upstream 279829 62927555 ~ 62927951 (-) True G633865
XM_021610037.2 mRNA downstream 30279 62612769 ~ 62616742 (-) True LOC110528181
XM_021610036.2 mRNA downstream 57273 62538333 ~ 62589748 (-) True slc4a8
XM_021610035.2 mRNA downstream 57275 62538333 ~ 62589746 (-) False slc4a8
XR_005052728.1 mRNA downstream 101894 62544984 ~ 62545127 (-) True LOC118965401
XM_036983722.1 mRNA downstream 126503 62506368 ~ 62520518 (-) False LOC118965309
XM_021610040.2 mRNA upstream 440 62648166 ~ 62822425 (-) False LOC110528182
XM_036983725.1 mRNA upstream 440 62648166 ~ 62822425 (-) False LOC110528182
XM_036983726.1 mRNA upstream 440 62648166 ~ 62822425 (-) False LOC110528182
XM_036983727.1 mRNA upstream 440 62648166 ~ 62822425 (-) False LOC110528182
XM_036983728.1 mRNA upstream 440 62648166 ~ 62822425 (-) False LOC110528182
TU719986 other downstream 126511 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 424971 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 425343 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 955377 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1447583 61198007 ~ 61199438 (-) True G631687
TU720546 other upstream 359049 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1138046 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1138073 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1346790 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1384720 64032446 ~ 64035381 (-) True G635167

Expression Profile