RNA id: LOC110528195


Basic Information

Item Value
RNA id LOC110528195
length 1191
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110528195
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63290827 ~ 63297342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCTCGAACGGCCTCATTAGAGCAGAGATATGGGGGGAAATGCGATCAGGGTTGGAAAGGGATTAACCTCCtaatagtgctctatatagggcttGGTTGGTTGTAATCTGCACAGTGGAGACAGATTCAGCACAGCCACTGTAAGAACAACTTCAATCTCTCTCTTCTACTGTACCACAACTGAGGGAAACCTAGAAGAAAATAACAGAAACAAGACGGAAGGGACACAAAAAGAAAAGGACACAGAGGGAGCTTCATCATATAGAAGGAAATCTACTACTGATGTTGACAAGCCTGAATGACATCATAAGaacaaggacaacaacaacaccGTAAACAACAGAAAGTCAACACTAAAGGGATTCAAAAAAAGACGCAAACATGACCAAGGGAAAGcaaaaggaAGTTGAGTTGAAAGAAGTTGAGTTGAATGAAGTGTCTCCAAAGACAGGCAAAGAGTACCCACCCAGCTATGAAGAGGCTACTGCAGactatGAGGAGATGCAGACCCAGTTCTCCTGGGACGACCAGGCCGTCAGGAGGATCTTCATCAGAAAgGTCTATGCCATCCTGATGATCCAACTCTTTGTGACTGTGGCCATTGTTGCTCTCTTCACATTCTGTGCACCAGTGAGGTTTTACATTCAGGCACACCCCCACCTGTACATGTGCTCCTACATGATGTTCTTGGCCACCTACATTGCACTGAACTGCTGTGGTGAACAAATCAGGAGGCAGTTTCCCTGGAACCTCATTCTGCTGTCTCTCTTTACTCTCAGCCTGGCCTGCATGATGGGCTTTGTGTCCAGcttctACAACACCAAGTCTGTGGTCCTGTGTCTGGGCATCACTGCTGTGGTGTGTATGTCTGTCACCATCTTCAGCTTCCAGACCAAGATTGACTTCACCTCTTACCAGGGAGTCCTGTTTGTCCTGACCATGGTCATGCTGTACTGTTGCATCATACTCTCCATCGTCATCCCTTTTGGATATGTTCCCTGGTTACAAGCCATCTACGCTGTGATAGGAGCTATCCTCTTCACTCTGttccTGGCGTTTGACACCCAGCTGCTGATAGGCAACAAGCGCTACACTATGAGTCCAGAGGAGTACGTCTTTGCCACCCTGAACCTCTACCTGGACATTATATACCTGTTCAGCTTCCTACTTTCGTGTTTTGGAGGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720743 lncRNA downstream 101740 63188847 ~ 63189087 (-) True G634035
TU720714 lncRNA downstream 121231 63169342 ~ 63169596 (-) True G634007
TU720710 lncRNA downstream 123416 63167191 ~ 63167411 (-) True G634003
TU720695 lncRNA downstream 140267 63150322 ~ 63150560 (-) True G633988
TU720689 lncRNA downstream 148596 63141919 ~ 63142231 (-) True LOC110528994
TU720962 lncRNA upstream 43886 63341228 ~ 63341463 (-) True G634232
TU720963 lncRNA upstream 46053 63343395 ~ 63343671 (-) True G634233
TU720964 lncRNA upstream 52940 63350282 ~ 63350560 (-) True G634234
TU720965 lncRNA upstream 53444 63350786 ~ 63350997 (-) True G634235
TU721171 lncRNA upstream 194505 63491847 ~ 63492082 (-) True G634432
LOC110528994 mRNA downstream 148327 63128190 ~ 63142500 (-) False LOC110528994
XM_036983739.1 mRNA downstream 282755 62983119 ~ 63008072 (-) False si:dkey-28n18.9
XM_036983740.1 mRNA downstream 282774 62983119 ~ 63008053 (-) False si:dkey-28n18.9
XM_021610047.2 mRNA downstream 282787 62983119 ~ 63008040 (-) False si:dkey-28n18.9
XM_021610044.2 mRNA downstream 389897 62882286 ~ 62900930 (-) False LOC110528187
XM_036983743.1 mRNA upstream 21798 63319140 ~ 63329491 (-) False nr1d4b
XM_036983741.1 mRNA upstream 21798 63319140 ~ 63329493 (-) False nr1d4b
XM_021610056.2 mRNA upstream 21798 63319140 ~ 63332492 (-) True nr1d4b
XM_021610058.2 mRNA upstream 167041 63464383 ~ 63472251 (-) False calcoco1b
XM_036983746.1 mRNA upstream 167041 63464383 ~ 63537584 (-) True calcoco1b
TU720546 other downstream 282787 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU719986 other downstream 770317 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 1068777 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 1069149 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 1599183 61691248 ~ 61691644 (-) True G632459
TU721875 other upstream 488430 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 488457 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 697174 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 735104 64032446 ~ 64035381 (-) True G635167
TU723004 other upstream 1020852 64318194 ~ 64326230 (-) False G636055

Expression Profile