RNA id: XM_021610056.2


Basic Information

Item Value
RNA id XM_021610056.2
length 3889
RNA type mRNA
GC content 0.48
exon number 6
gene id nr1d4b
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63319140 ~ 63332492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACATCGTGTTCGGTGGCTCACATGCCGCGCGCACATGCAGCGGAGCTTTACCAGCATTCCAATGTCGAGTGAGTCTAACTGTCTCGCCTCCACTCTAGCTCTCCACCAATGAAAACGTGAGAACGAATAAAGAAAGGTGGAGTAAAAGAGGTGGATGAGATATTCTAATAGAGCGTGacataggcatacagagagaaaaagagagagagagaaaaaagagagagagacagtgtaatCCCTAACATACAAAACCTACGACAGAGATTGAAAGGAACAAAAAAAACGGGGGTCAAAAAAAACTGGTCACATTTCTCAGACACCTGAAAACGTGCTGGTTAGTGTGGGCGAAGTGGATTGCCTATTAATGGATGGGTGTGCTTAAACTACTCCCACACTTATGTCTTTGGAGATGTTGATGGTGACTACACTGGCACTAGAGCTGAATGCTTGGAATTTATTTTCAAAGAACGTTTAGTTCAGCCTACTGTACATCACACGACCTACGGACACCAAGCGAATCAGGCTACGGGCAACAAAGGCACTGAACCTGTTCGCAATTACGCACATTGAAGACGATTTGTAACTATTTCGCCAAACCGAAACCTGTTTAGGTTTTGCTCAACTTTAAATCAGTTTTGATATCTTTCACACTTGACGGGTTTGAAGGACCTGCGCACAGTCTCATTGCTTTTGTCATTGGGATTGGCTACCAACTCTATGCTTTCTTGGCGGTTCATGACTGTATAACCTATATCAACGAAACTCCTCATTGACGCAGAGACAAACCAACATTAAATCATTTGAATATCGTTTATAAATCAACCAAACACCGGAAAACATGGAAAACAGCCCTGGTGGTGTGATACTGTATGCTGGCTCATCTGGTAGTGCCAGCCCCAGCCCTGGCAGCCCCTCCAGCGGGTACCAGACCCAGTCCCCCCGGTCCTCCCATTCCCAATCGTCATCTCCTGAGCCTGTCTCCTTCCCCGAGATCGGCCctctgaagagagaaagaggggagaacaGGGGAGGACCTTCACCCAAACTAGTCTTCCAGTTCCCTGAAGCCAATGCCTCTACAACCACTACATCCTCTGGCAATACCTACGCCCACCCTATGTTGGCCAAGAGGCCCTGCGGATTCACTGGCACCTTCACCAAGACAGGAGGCATGGTGCTCCTGTGTAAGGTGTGTGGGGACATTGCGTCTGGCTTCCATTACGGCGTTCACGCCTGTGAAGGCTGCAAGGGTTTCTTCCGCCGCAGCATCCAGCAGAACATCCACTACAAGATGTGTGTGAAGAATGAAAGCTGCCTGATCATGCGCATGAACCGCAACCGGTGCCAGCACTGCCGTTTCAAGAAGTGTCTCTCCGTGGGCATGTCCAGAGATGcTGTGCGTTTTGGGCGTATCCCCAAGCGTGAGAAGCAGAGGCTATTGGACGAGATGCAGAGCTACATGAACAGCCTCAATGAATCAGCATCCATGGAGATTGACtcctcaccttcttcctctgAGGCCCCAGCCAGTCCAGAATCTGGAGATTCCATTTCCTCTGCCTACCACAACATCTTCGCCCAAGAGGATGTGAAGCCAGTAATCAAGATGGCcgtcaacatcaacaacaacaatgtcCGTAACAATCCAGCACATGAGTCTGGCTACTCTCACCCGGCACACCAAACCCACTCCCATTCCAACCCCTCTCAGGGGTACCAGTCACACCCCACACAAAGCTACCAGACCCCCTCGCGCTGCCCACGCAACAACAATGTTGACAACGCCCAGTATACCTACCAACCATCATCCAATCAGAGTCAATGCCCATTGTCCAATGGTAGCCAGCCAGCTCAGACCTTCCAAGCCAATCAAAACAGCTTTCCAGCTGGCAAGTCTCAAAACCAGACTACCTGCCCCTGGAAGTTGAATGGAGGTGCCAAAGTTCTGgcgTGTCCCTTGAACGCATGTCCCGTGGCCCCCCGTGACCGTTCCAGCCAGCAGATATGGGAGGCCTTCTCCCAGTGCTTCACCCCAGCCGTCAAGGAGGTGGTGGAGTTTGCCAAGAGCATCCCAGGGTTCCAGAGTCTCAGCCAGCATGACCAGGTCATGCTGCTTAAGGCTGGCACCTTCCAGGTGCTGATGGTCAGATTCTGCTCGCTGTTCGACCCCAAGGAGAAGACGGTGACCTTCCTGAACGGCCAAACATACCCCCTGATGTCCCTGCGGGCGCTGGGTATGGGCACTCTGCTGGACGCCATGTTTGAGTTTAGTGAGAAGCTGGGAGCTCTAGGTCTAGAGCCCGATGAGATGGCCCTCTTCATGGCTGTGGTGCTAGTGTCTGCTGACCGTTCAGGTATGGCTGACGTTGTTGCAGTGGAGCAGCTTCAGGAGAGTCTGATCAAAGCCCTGCGCTCGCTCATCACCCGCCGTCGCCCTGACGACAGCACCCTCTTCCCCAAGCTGCTGCTGCGCCTGCCCGACCTGCGCACCCTCAACAACCTGCACTCTGACAAACTGCTGGCCTTCAGCATCGACCTCTAAGGGCCTGGAGAAACCACAGCCCACAGGGACACCCACTGACTACCGGACCCCCGAAAGGGGCAGTCCTCTTGGGAAACACCCTCATGATCCCTTCACTCCAGCCATAAGCCACCAGCCAGTCACCATCAGGCTCTCTTCAATGAGCTGTGTTTGCTGGAGCTGGAACTGGGACAGAAGCAGGGTTGGACAAGGTGAATGAGTGGACTGAGAGGCATCTCAAAGGAAgatggaggaaaagaggagggtggagactCTTGAACTATGACCTCATGAACAATACTCAGAGCTGGTAAAACCTCTAAAAGACTCATAGACTTATAGTCTGCTGAACAAGTCGGTGTGCTGTGAGTTAAATGGCAAAGCACCATCTTAGACCAACTCAGCTCCCAAAGTTGAGGGACGAGGGTCTAAAAATCCTCCATTACCCATAACTCCCGGTGACAGTGATTGAAGACCAAAATTCtgttccattcctcctctctgattccacgcttcactATGTCCTTCTGTctgcaacagacagacaggggcaaACCAGCAAGAAGGAAGGACACCCTCTTCACGTGAGAAAGGGAAATACACACAAACTATATCTTTTCTTCCTACACATTCACCCTACACAGGCTGTTCAATGAATAACAAAGCACTTTCCATACATCAACACACATCTGAAATCAACCCATATAATAGAGCAATAGCAATGTATAAAACACACTATTAGATCCCTAACTGACTGTGTTATACACTGTTATAATGACCTAAGCTATTTTCAAAATCACGTCATCTATCTTTTTGGAAATCAAATATTTGGGATTTGATGAGAAAATTGATTATTTCCATTTGTAAGAATTGAGAGTAGGATGGATTGTATTTGTATGCTGTAATCAGGGAGATACTATTTGGACATTTTAGACCATATTTGTCGGGTTATGTTTTAAGGTATTCTATTGTTGTACATATTAGATATAATATTTGTGACTGGTTCCTACTCCATTTGTTTGAGTTGATTGCTGTATGATGTTAGCACCATTGAAGACAAAGCAACGGTGCCATGTTCAAGAGGTGCCCGATTGTTTGGGTGATGCAAGGTGTGCATCTACTGTATGTGTCCATTGGTCTTCCCTGGAGCATTACAAACCCCACCCCTCATTCTTACCGCAACAAGAGAGCAACCGATGGAACCATGTGCACAAACCATGTAAAAAAGTGTTTGATTTGAACCTATATTATTGAAATATAACTATTGTTAATTGATCCATGCATCACCTCGTGTATATTTTGTAAATGTTTCATGTTTAAACTTCTTCCATAGAGAACCAATATTAAATGACattatatactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720743 lncRNA downstream 130053 63188847 ~ 63189087 (-) True G634035
TU720714 lncRNA downstream 149544 63169342 ~ 63169596 (-) True G634007
TU720710 lncRNA downstream 151729 63167191 ~ 63167411 (-) True G634003
TU720695 lncRNA downstream 168580 63150322 ~ 63150560 (-) True G633988
TU720689 lncRNA downstream 176909 63141919 ~ 63142231 (-) True LOC110528994
TU720962 lncRNA upstream 8736 63341228 ~ 63341463 (-) True G634232
TU720963 lncRNA upstream 10903 63343395 ~ 63343671 (-) True G634233
TU720964 lncRNA upstream 17790 63350282 ~ 63350560 (-) True G634234
TU720965 lncRNA upstream 18294 63350786 ~ 63350997 (-) True G634235
TU721171 lncRNA upstream 159355 63491847 ~ 63492082 (-) True G634432
LOC110528195 mRNA downstream 21798 63290827 ~ 63297342 (-) True LOC110528195
LOC110528994 mRNA downstream 176640 63128190 ~ 63142500 (-) False LOC110528994
XM_036983739.1 mRNA downstream 311068 62983119 ~ 63008072 (-) False si:dkey-28n18.9
XM_036983740.1 mRNA downstream 311087 62983119 ~ 63008053 (-) False si:dkey-28n18.9
XM_021610047.2 mRNA downstream 311100 62983119 ~ 63008040 (-) False si:dkey-28n18.9
XM_021610058.2 mRNA upstream 131891 63464383 ~ 63472251 (-) False calcoco1b
XM_036983746.1 mRNA upstream 131891 63464383 ~ 63537584 (-) True calcoco1b
trnar-ucu mRNA upstream 334735 63667227 ~ 63667316 (-) True trnar-ucu
XM_021610067.2 mRNA upstream 349783 63682275 ~ 63685137 (-) True smug1
XM_036983748.1 mRNA upstream 453285 63785777 ~ 63827077 (-) False LOC110528212
TU720546 other downstream 311100 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU719986 other downstream 798630 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 1097090 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 1097462 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 1627496 61691248 ~ 61691644 (-) True G632459
TU721875 other upstream 453280 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 453307 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 662024 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 699954 64032446 ~ 64035381 (-) True G635167
TU723004 other upstream 985702 64318194 ~ 64326230 (-) False G636055

Expression Profile