RNA id: XM_021610058.2


Basic Information

Item Value
RNA id XM_021610058.2
length 2602
RNA type mRNA
GC content 0.48
exon number 14
gene id calcoco1b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63464383 ~ 63537584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCccgggtgtgtgtttgtgttgtagtAGCAGGCAGCCTGCTATTAGTTGACAGGCGAGCATGCATCACTTTATTTCAATCACATCTCTCTGACAAATAGGCAGCATTGAAGAGATTGGAAGAAAATTGCGTAGCCACTTTAGAGCTCCTAATTGCCATGGAAAAGCAGTCCAAGGTGGAATTTCGGAATGTGGGACAGATGTATTTCCCCCAAAGTAGAGTGGAGTGCCACTACAGCCTTACCTCTCATCATCACTGGACCAACAAGGACTGGATAGGCCTCTTCAAGGCTGGCTGGTCATCAGTGAAAGAGTACACCACCTTTGCATGGGCACTCACTCCTGAGGGGTACACTGAAGGAAATAATGCCAACTGCTGTGTACATTTCCAAGCCTCTTACCTGCCCCGCCCCAGTGCGGTGGAGTACCAGTTTGTCTATGTGGATCAGAGAGGCGAGGTGTGTGCCCGCAGTCGCCAGTTCACCTTCTGCATTTCCAGGCCTCTGGATGAGCTGGAGACATTGACAGAGGAGcgggatgaggatgaggagggtggagagggggacGGGGACGACCTGCTCCTGGTGGTGCCCAGAGCTCAACTCCTGCAGACTCGGCTGGATGAATGCCTTAGAGAACAGGCCGATTCAAAACAGGCccgggaggaggcagagagggagaaggagagagaggaagaaaggagcaAAAGGGCGAAGGATGagtgggagcgagagagggaggggatgaatGAGGAGATCTCTGAATTGAGGGacaacctgagacggagctgcgaCAGGATGGAGAAGGTGGAGGGGAAACAGAAGGATATGCAGTCCTCTCAAGAAACCTTGTCTACTCTATTGGATGAGAAAGCTGAGTGCCTGCAGCGAATCAGAGGGCTGGAAGATGACATAATGGTTCTAAttcagagagggaaggagacagaagcTGAACTTGAAAGGATGAAGGAGAGAGTGAAAAAGATGTCCACTCAATTGAGGGAtgaagaacaggagagaaataatCTGCAGGTGGAGAACGGGGCTGTGCTGGCTGAGCTGAGGGCGATGCAAAAGCGTTTGGAGGCCAGCGAACGCGGGGCAGAAGGTCTGAGGCAGGAGCTGCGTGAGATGGGGGCTCAGCAGGGCCACAGCCACGCTGAGCTGCACCAAGCCAGGCTGCAGGCTGCCCAGCTCACCCTGCAGCAGTCTGAGGCTGACCTGGCCCTGAGAGAGGGACGCGCTCACTGggcccaggagagagaggccttcCAACAAGCAGCAGAGCTTGATAAAGAGAGGGTGCAGAAGTTAAGCCGTGAGGTGCAACGGAAGGAACAGTGGCTccaagaggagaggatggagaggcaGAAACTAGAAGTGGAGCTTGAAAAAGAGAAGGATTGCAACAGGGTGCTGCTGAGCGATGCCCGCAGGGAGGTGCAGGAACTGAAGGCCAGAATGAGAATGaaccagaaggagagagagcagcagaagaTGGAGAGACAGGACCTGCTGGACTACATGCATCAGTTGGAGCAGAGACTGGAGGTGGCTACAGACAATAAGTGGAATGAAGTGGCTCTCTACTACTCAACCACTCGTGGCACTGACACTCCATCTCAGGATGAGAAACCCTCTTCTGAGGATGAGATGCCTGCATCTCCCCTACCCTACCGGACACCCAGACTACACTACTGGAGCGACGCCCTGGAACGCTCCTCTCACCGTAGTGTGAAGTGTCTCCAGACTGAGACGGATGAGGAAGAGCAGAACAAGACCAGTAAGGGTGAAGACACACCACTGATTCTGCCAGACCTCACCAACCCCATGCTAAGTGAGTTTGCTGACGGCTCCCCCTTGTGGTAACAGCAATGAGGACAGAGGACAAGTTGCTTGATAGTTTACAATGTAGGCCCTATATTATTGTTGGCTACAGTCAGCCATGCAGACAAACTGTGCTGTAGAGATACAATATGTATACGATTATGAATCTGGCTTGGGATGTTGTGCGTGATGAGTGTGTTTTTTTAAAGACTGTATTGGTTGTGTGGTGAGTTACTCTACAAAAAATATTCTAACTAAAAAAACAATTTGGCACTTTTTCTcttagatttttttgtttgtttacattaTATTAGTGGTTTGGTTAAGATTCAATGTTGGAAATTAAAAGATGTTTTGCATGAAAGGTGACTATTGTGCCATGTTCATATGAGCACAGTCTCAACTGATGTTTGCATAGAAATGGAACAATGGTTTATTAGGCCATACAACTTAGCAGATGCTAGCTGTAGACCTACATTTGAAATGAGAGGTTTCTTATTGAAAGCAATGTGTCTATTTGAAAATGTTACTATTTTTATCTAGGTATGCATTTTCTCTAGGTGCTATAACTAGCCCGATTTGTGAGTAGGCTTTAAAAATGTTTGTAGATTTGTAAAAGTGTTCACAGGAGTTATAGAATGAACAAGTTGTGTCTATTGGTTCTGTGGTTTTCTTTTATTGAATGATTTATCCATTTGACTGTGAAGTTTACTTTCTGAGTGCTTCACACGGTGTAGAGTCGTTTCTGTAATAAAACACTACCTGTTTATTGATTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720965 lncRNA downstream 113386 63350786 ~ 63350997 (-) True G634235
TU720964 lncRNA downstream 113823 63350282 ~ 63350560 (-) True G634234
TU720963 lncRNA downstream 120712 63343395 ~ 63343671 (-) True G634233
TU720962 lncRNA downstream 122920 63341228 ~ 63341463 (-) True G634232
TU720743 lncRNA downstream 275296 63188847 ~ 63189087 (-) True G634035
TU721171 lncRNA upstream 19596 63491847 ~ 63492082 (-) True G634432
TU721173 lncRNA upstream 21032 63493283 ~ 63493490 (-) True G634434
TU721200 lncRNA upstream 59067 63531318 ~ 63531553 (-) True G634459
TU721241 lncRNA upstream 91162 63563413 ~ 63563755 (-) True G634500
TU721730 lncRNA upstream 103510 63575761 ~ 63576070 (-) True G634927
XM_021610056.2 mRNA downstream 131891 63319140 ~ 63332492 (-) True nr1d4b
XM_036983741.1 mRNA downstream 134890 63319140 ~ 63329493 (-) False nr1d4b
XM_036983743.1 mRNA downstream 134892 63319140 ~ 63329491 (-) False nr1d4b
LOC110528195 mRNA downstream 167041 63290827 ~ 63297342 (-) True LOC110528195
LOC110528994 mRNA downstream 321883 63128190 ~ 63142500 (-) False LOC110528994
trnar-ucu mRNA upstream 194976 63667227 ~ 63667316 (-) True trnar-ucu
XM_021610067.2 mRNA upstream 210024 63682275 ~ 63685137 (-) True smug1
XM_036983748.1 mRNA upstream 313526 63785777 ~ 63827077 (-) False LOC110528212
XM_036983749.1 mRNA upstream 313526 63785777 ~ 63827297 (-) False LOC110528212
XM_036983747.1 mRNA upstream 313526 63785777 ~ 63827547 (-) False LOC110528212
TU720546 other downstream 456343 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU719986 other downstream 943873 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 1242333 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 1242705 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 1772739 61691248 ~ 61691644 (-) True G632459
TU721875 other upstream 313521 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 313548 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 522265 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 560195 64032446 ~ 64035381 (-) True G635167
TU723004 other upstream 845943 64318194 ~ 64326230 (-) False G636055

Expression Profile