RNA id: TU721299



Basic Information


Item Value
RNA id TU721299
length 668
RNA type TUCP
GC content 0.49
exon number 2
gene id LOC110528206
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63619980 ~ 63622602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaggtatgaaTTCTTATTTCGCAAACCCGTCGCTCTCATGCCATTTAGCTGGTGGTCAAGAGGTTTTACCAAACGTGGCCCTAAACTCAACTACCTATGACCCAGTTCGACACTTCTCCTCCTACGGAACCGCTGTAGCCCAAAACCGGATATATTCCTCGCCTTTCTATTCTCCCCAAGACAACGTTGTATTCGGCTCGACCAGGGGACCGTACGAGTATGGATCCAACGTGTTTTACCAAGACAAGGACGTGCTACCCAGCTGTAGGCAGAGCAGTTTGGGACAAGGTTCACAAAGCTCGCTCGCGCAGGATTACCAGTCTGATCAAGGCAGGAACGGCTCACAGGAACAAAAGGGGAACATTCAGATCTACCCGTGGATGCAACGGATGAACTCTCATAGCGGAGTTGGATACGGTTCTGACAGGCGAAGAGGACGCCAAATTTACTCCCGATACCAAACTCTAGAACTCGAAAAGGAATTCCATTTCAACCGCTACTTGACGAGACGCAGACGTATCGAAATCGCCAACGCACTATGTCTATCGGAACGTCAGATAAAAATCTGGTTCCAGAATCGCCGGATGAAATGGAAAAAGGAAAGCAATCTAACGTCCACTCTCGCCGAAAGTGGTTCGGCAGGGGCAAGTCAAGACACAGGAAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU721291 lncRNA upstream 2669 63617433 ~ 63617684 (+) True G634548
TU721284 lncRNA upstream 9666 63610393 ~ 63610687 (+) True G634541
TU721278 lncRNA upstream 13996 63605745 ~ 63606357 (+) True LOC110528204
TU721279 lncRNA upstream 18064 63600013 ~ 63602289 (+) True G634536
TU721262 lncRNA upstream 33657 63576700 ~ 63586696 (+) True LOC110528201
TU721303 lncRNA downstream 13061 63634592 ~ 63634872 (+) True G634555
TU721304 lncRNA downstream 16278 63637809 ~ 63638027 (+) True G634556
TU721309 lncRNA downstream 20048 63641579 ~ 63641794 (+) True G634561
TU721313 lncRNA downstream 22752 63644283 ~ 63644558 (+) True G634565
TU721339 lncRNA downstream 60768 63682299 ~ 63684167 (+) True G634591
XM_021610063.2 mRNA upstream 13986 63601448 ~ 63606367 (+) False LOC110528204
XM_021610061.2 mRNA upstream 18921 63596461 ~ 63601432 (+) True LOC110528203
LOC110528201 mRNA upstream 33628 63581914 ~ 63586725 (+) False LOC110528201
XM_021610060.2 mRNA upstream 47083 63569803 ~ 63573270 (+) True LOC110528202
XM_021610059.2 mRNA upstream 62031 63554057 ~ 63558322 (+) True LOC110528199
XM_021610066.2 mRNA downstream 2539 63624070 ~ 63627576 (+) True LOC110528207
XR_005052631.1 mRNA downstream 7315 63628846 ~ 63648659 (+) True LOC110528209
XM_021610064.2 mRNA downstream 13466 63634997 ~ 63637638 (+) True LOC110528205
XR_002474213.2 mRNA downstream 75531 63697062 ~ 63702027 (+) False LOC110528211
XR_005052632.1 mRNA downstream 224587 63846118 ~ 63849735 (+) False LOC118965312
TU720268 other upstream 690654 62929398 ~ 62929699 (+) True G633613
TU719409 other upstream 1278388 62340021 ~ 62341965 (+) True LOC110528175
TU719361 other upstream 1291292 62245920 ~ 62329061 (+) True G632817
TU719353 other upstream 1389004 62230515 ~ 62231349 (+) True G632809
TU719313 other upstream 1480362 62139516 ~ 62139991 (+) True G632776
TU721636 other downstream 574510 64196041 ~ 64201232 (+) True LOC110528222
TU722203 other downstream 696669 64318200 ~ 64326259 (+) False G635332
TU722204 other downstream 696669 64318200 ~ 64326259 (+) True G635332
TU722547 other downstream 1163685 64785216 ~ 64786393 (+) True G635635
TU722685 other downstream 1430113 65051644 ~ 65052156 (+) True G635769

Expression Profile