RNA id: XR_005052634.1


Basic Information

Item Value
RNA id XR_005052634.1
length 1409
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC110528215
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63900937 ~ 63962763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGAACCGTACATTTTCTAGAAAGTAAATGATGTCATTAGAAGGCGCCATTTGAACTCTGCGGAATTTGTTTTGATGGAGCTCGACGTACTGGAAATATGTAAACAAAAACGAATGCGGCCACTTGAAAGATAGAAGTCTAACGGCAAGGTAAACGATGGACGAAATCAACCCCCATTACCGCTTTATGAACTGGAGGCGGAGGATACGGGAGGTGCGGGCCGTGCGGTACCGCGAGCGGTtcaagaggatgatgagggatggAGAAGTGCTCAGTTACCAAGGGAACTCTGATGAAGTTGGCTGCTACGTGGCTCCAAGGCCGTTATCCAAAGGAAACTGCTACTTTGAGGTGACCATCATTGACACAGGGGTGAGGGGGATGATTGCTGTTGGCCTGGTGCCTCAGTACTACAAGCTGGACCATCAGCCTGGCTGGCTCCCGCACTCAGTGGCCTACCACGCTGATGATGGCAAGCTGTACAATGGGAACACTATTGGACAGCAGTTTGGTCCCAAGTGTAATTGTGGCGATCGTATTGGCTGTGGGATCTACCTAGAGGCATTCGAGGACAGACAAACGACGGTCTTCTTCACCAAAAATGGAAAAGAAGTGGGCATGGTGGTGGTCCCAGCGTCTCCAGAGGCACTCTACCCGGCCGTGGGGATGCACTCCCTGGGGGAGGAGGTGCAGCTGGACCTGCAAGTGGAGTGGGGGATGGAGAAGGAAGACGGACTGATGATAGTGGACAGCCACGAGGACGAGTGGGGGCGTCTCCATGACGTCAGATTCACTGGCTCAGTGTTGGAGTACATGGGTAAAGGGAAAAGCATCGTGGATGTGGGTTTGGCCCAGGCCCGTCTACCCCTCAACACACGCTGCCACTACTATGAGCTGGAGATCACTGATGCAGGAGAGAAGTGCTACATCGCCCTGGGACTGGCACGCAGGGGATATCCCAAAAACAGACACCCTGGCTGGAGCAGGGGCTCCATAGCCTATCATGCAGatgaTGGGAAGCTCTTCCAGGGTAGTGGGGTGGGGGACGCCTTTGGCCCTCGCTGTTTTGAGGGGGACGTCATGGTCTGTGGCATCATGTTCCCACAGGACTACATCCTGGACAGTGGAGTGTGGCTCCCTCAGATGACCGTGACGACGGGGACTCAGAGTTGCGGCCTAAGCAGCAGCGTGTCCAGAATGACCTCTATATGAACGatgaagacgaggaggaggatggggaggaacTGGAGGGGAGGAAGGTCGTGGTGTTCTTCACACGGAATGGGAAGGTGGTGGGCCGCAAGGAGGTGGCAGTGCCAGCAGGGGGGTTCTATCCTACCATCGGCATGATGAGCACCGGGGAAAATGTCAGGGTGGACCTGCACCCTCTAagtgggtgagaggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU721915 lncRNA downstream 58523 63842330 ~ 63842553 (-) True G635084
TU721913 lncRNA downstream 61125 63839744 ~ 63839951 (-) True G635082
TU721911 lncRNA downstream 62893 63837957 ~ 63838183 (-) True G635080
TU721910 lncRNA downstream 63774 63837064 ~ 63837302 (-) True G635079
TU721880 lncRNA downstream 105747 63785799 ~ 63795329 (-) True LOC110528212
TU722032 lncRNA upstream 74800 64037563 ~ 64037887 (-) True G635186
TU722033 lncRNA upstream 75793 64038556 ~ 64038827 (-) True G635187
TU722099 lncRNA upstream 170441 64133204 ~ 64140851 (-) True G635244
TU722101 lncRNA upstream 174238 64137001 ~ 64144757 (-) True G635246
TU722160 lncRNA upstream 268987 64231750 ~ 64252302 (-) True LOC110528224
XM_036983794.1 mRNA downstream 73529 63785777 ~ 63827547 (-) False LOC110528212
XM_021610075.2 mRNA upstream 30773 63993536 ~ 64023728 (-) False LOC110528216
XM_021610076.2 mRNA upstream 30773 63993536 ~ 64023730 (-) False LOC110528216
XM_021610077.2 mRNA upstream 30773 63993536 ~ 64036771 (-) False LOC110528216
XM_036983809.1 mRNA upstream 87901 64050664 ~ 64065462 (-) False LOC110528217
XM_036983810.1 mRNA upstream 87901 64050664 ~ 64065789 (-) False LOC110528217
TU721875 other downstream 108296 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other downstream 109244 63785799 ~ 63791832 (-) False LOC110528212
TU720546 other downstream 893036 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU719986 other downstream 1380566 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 1679026 62221272 ~ 62222050 (-) False G632994
TU722010 other upstream 31753 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 69683 64032446 ~ 64035381 (-) True G635167
TU723004 other upstream 355431 64318194 ~ 64326230 (-) False G636055
TU723007 other upstream 355431 64318194 ~ 64326230 (-) False G636055
TU723011 other upstream 355431 64318194 ~ 64326230 (-) False G636055

Expression Profile