RNA id: XM_036983835.1


Basic Information

Item Value
RNA id XM_036983835.1
length 2570
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110528251
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64927583 ~ 64942652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTGTGACTCAAATAATAGTGACTTGGTACCACCTCTGCGGACCACTCCCCTTTTGAGTGTGAGTCGTCCTTCTTCTACCTTACTTCAAATCAAGGCAGTTCGCCTTTCAATCACTTCTATTCAAGTGGGAAATACGAGAATAGTATTAGTAAGGCAGTTTTCAAGAGTCGACTTTTGAACCAGATTGATGCAAATGGCATTGTGAAAGTGGACTTTCCCTTgctgccccccccacccccccaccctcacccccccccccccccccccccccccaccccccacctatGAATACCACCTGACCCACATACATGGAGGGCAAAGAAGAGATCAGTGACACAGACAGTGGCATCATTCTCCACTCTGGCCCTGATAGTCCTTTCACGATTATGAAGGACGTGATCACTCATACCCGGGCCGTCAAGCTCAAGCATCAGTCTCTGGAGGACCGGCTAGAGCTCTGCCTACTGGAGCTGAAGAAACTCTGCATCCGAGAGGCTGAGCTAACTGGTCGGCTGTCTGCAGATTACCCAGTGTTGCCTGGGGAGAAGCCGCATCAAATTCGCCAACGCATCGGAGCGGCCTTCAAACAAGACGAGCAGAGCATCTCACAGGGAGCAGCGGACTCAGAGCTGAACTCTGTGGAAGCTGAGTTATCTCTTCAGCTGCAGATATACAAAGCGGCCCGAAGACTGTGCCATGAGGAACACCTCAGCAAGGCGCAGAAGACAAGCCGGTTACAGCAGTGCAAGCGTGAGGAGAAGAAAGTCAAACAACTGCAGACAGCATTTCAGCTGCACCTACAGCACGGGCGGTCTTCACCACGGCCAGGCTGCATCAGCACACAAAGAGATCAGGGCACTTCTGATGATAGCTCTCTGTCCGATTCGGCGCTGCTCGATGAAGAAAAGCTGATCAGTCAGTCATCTCAACCATCCTTGGAGGCCCCTCACCCAGGAGGACCAGCAGACCCTCCCCAGCCCCCCCCAGACCCCTCACACCTCCCTGGGCCTAGCCCCCACAAGCCAGCCCATACTACTCCAACTCTGGAGGAGTTACAGTCCAGCTTCAACACCAACCTGGAATTGGAGGCCCCTCCCATCGAGCACTCCCCTTGGACTGAGTCCAGTCTGGACCAGCCTTACCAGAAAACCAAGAACAAGTCACACTCTTGTAGCAGCAAGTCAAGTCCAGCCGTGACCCCTGTGTTGCCTCCAGTGGAAGCCTGTTATGAAGACACTGCTCTGCCCCTGCAGTTCTCCCATCTCAGACTGTGCCCAATCCAGTCAAACAGCGCCCCCTCCACCCCAGAGATGCACCTTCGCCGTCAGTTTTCTCTCAGGCTTCCCAACAGTGAGCCTCCGTTGAACCTGGATAAGGACCGGGGTCGTACCCGTGTTCCCAGGAGGCTACTGACGGAATACGTGGTAATGTCTCCAGGCGAGTCCCCCGTCCAGAGGGGAGGCTACAGAAACCACATTTACCACTCCAGCTCTGAGACTAAGGACAGTAACTCTGAACACTCTGCCCCATCCTATACTAGCTCCCTGTGTCGTGAGATGCCCTGTGACCTGCCATGGCAGTGTCAGCCCACCTATAGGTACCAGTCCAGCCCCAACGACAATCATGGACCAATGGCCTACCCCCCAGGCCCCGGCTTCTACCAAAATCACCAGCATCAGTCCACCCCCAGCTTCCACAGAGGTTACTATGACCACGGGATGGTCTACCCTTCAGAGATGGACATGGCCAGGCTGTATCACGGCCCTCCGCCCCCCTGTCACTCCAGCCGATATGAGCACTGGTATGAGGAGGCCCCTGTGCACCCCCAGCGGGCTCTCAAGTCCCTTTCCCCCCACGTCAGACTGTCCCGCGCCCCCTCACTCAGAGAGTGCCCCCACCACCCCTCCAGAGGCTTCCCCCGGCAGGTGGTAAACGAGGAGCTCAAGTCATGGCACCAGCGCAACCAGTTCAGACCTCACTCCCTCGACCGACAGACTGCGATCAGGTTGAGGAACGTACCTGGCTGCGAGTCACCTCTCTCCCACCACCACAAGTACCCTGAACAGGCTCCCCAGAGACGGGTCCTCCAGAAGGCAGCGGATGGGACCCCGGAGCAGTGGTTTGTGGGTGACGAGTCAGAGCTCATCAGTCAGGTGTAGGATTAGGGAGAGGGCACCAAGTGCCACACCCTCTCTGGAACACTAACCTCTGCCCCCAGTCCACAAAGCCCTATTTATTCATTAATGTATTACACTAATGGACCTGGTGCAGATATGAGATGAGGGAGACCGGGCATAATATGAAAGAGGGCCTGAGGCTTTATACCATTGACCTCAACATGTTACCTGGGCAACAACAAATGATCAACTTAAGGCAGGAAGTAACAGACCACAATGCTAAAATAGTGCCGCCCTTTTTACTGTGAAAGAGCTACTGTTTTGAATTAATTCATAGTTAGCTTTATTTTGTACGGATCTGTTTAGTACTATGAAAAATGTTTCTAAACTGTTTTTCTAAAAGAAAATATTTCTCTGTAGAAGTTAATAAATAAAGATTTATACTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU723382 lncRNA downstream 1957 64925288 ~ 64925626 (-) True G636393
TU723360 lncRNA downstream 130000 64797298 ~ 64797583 (-) True G636371
TU723358 lncRNA downstream 132095 64795093 ~ 64795488 (-) True G636369
TU723357 lncRNA downstream 136767 64790615 ~ 64790816 (-) True G636368
TU723354 lncRNA downstream 142748 64784508 ~ 64784835 (-) True G636365
TU723389 lncRNA upstream 360 64943012 ~ 64943481 (-) True G636400
TU723445 lncRNA upstream 66365 65009017 ~ 65009458 (-) True G636453
TU723459 lncRNA upstream 89051 65031703 ~ 65031921 (-) True G636465
TU723460 lncRNA upstream 90504 65033156 ~ 65033573 (-) True G636466
TU723473 lncRNA upstream 102039 65044691 ~ 65045032 (-) True G636475
XM_021610146.2 mRNA downstream 10156 64909653 ~ 64917427 (-) True LOC110528250
XM_021610144.2 mRNA downstream 18621 64901860 ~ 64908962 (-) False LOC110528249
XM_021610145.2 mRNA downstream 18627 64903050 ~ 64908956 (-) True LOC110528249
XM_021610143.2 mRNA downstream 28727 64896568 ~ 64898856 (-) True LOC110528248
XM_021610141.2 mRNA downstream 30961 64867348 ~ 64896622 (-) True LOC110528247
XM_021608286.2 mRNA upstream 36173 64978825 ~ 64980471 (-) True LOC110527139
XR_005052637.1 mRNA upstream 45013 64987665 ~ 64989643 (-) False LOC110528252
XR_002474223.2 mRNA upstream 45013 64987665 ~ 65046518 (-) False LOC110528252
XM_021610149.2 mRNA upstream 45013 64987665 ~ 65046519 (-) True LOC110528252
XM_021610164.2 mRNA upstream 219312 65161964 ~ 65164712 (-) False LOC110528257
TU723292 other downstream 255567 64670850 ~ 64672016 (-) True LOC110528239
TU723175 other downstream 403402 64522514 ~ 64524181 (-) True LOC110528235
TU723011 other downstream 601353 64318194 ~ 64326230 (-) False G636055
TU723535 other upstream 191598 65134250 ~ 65134745 (-) True G636532
TU723536 other upstream 192886 65135538 ~ 65135795 (-) True G636533
TU723574 other upstream 291832 65234484 ~ 65236881 (-) True G636571
TU723769 other upstream 551138 65493790 ~ 65495157 (-) True G636719
TU724613 other upstream 938360 65881012 ~ 65882556 (-) True G637495

Expression Profile

XM_036983835.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_036983835.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036983835.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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