RNA id: XM_021610165.2



Basic Information


Item Value
RNA id XM_021610165.2
length 1385
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110528257
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65161964 ~ 65164712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACAAGTCTTCACTACTGTAGTGACATACTGATGCTCACGAAAaacaactagctagccagcccTTTTACCAACAGGAAAACAATACTTATATTTAAACTGACTTGTCCCATGGCTTAAAATCCCTTATATCGGACAACGCAGCTGTGAACGACAATACACACCGTTGAGTGCTGCTTTGGTCTAAAGTTGACTTAGCTACAGTTGTGGATGCATGACGAGGATCTGAAAGATGACGACTGAGACCCACGTCAAGGACATCAAGCCAGGACTCAAGAATCTCAACGTTATCTTCATCGTACTGGAAACCGGACGAGTGACAAAGACGAAGGATGGGCATGAGGTGCGGACCTGTAAGGTGGCCGACAAGACAGGCAGCATCAGCATCTCTGTTTGGGATGAGGTGGGGGGACTGATCCAAACCGGTGACATAATCAGACTCACTAAGGGATATGCATCTGTGTTCAAAGGTTGCCTGACTCTGTACACAGGCAGAGGTGGAGAGCTGTTGAAGATTGGAGAGTTCTGCATGGTGTACTCCGAGGTGCCAAATTTCAGTGAGCCTAACccagagtattctaacatggacCAGATGAAAAACAAGACGGTACTCAGTGACCAAGGAAACATACTGAACAATAATTCAGCTGGAAATGACACTACCAATGGGAACGGTGTAAATTCACAAGGTTCCGGGAGCTCAACTACCCCTCTGCAGGGAGGGCGGGCTGGCAGTGGTGTCGGCAGCAGGGCAAACAATCCAGGAGGGACCACTGTCAATGGAAAGGAGACCAGACGCTCTACCAAAAGATGATTAGAGAAGAGAGAAGCAAAGTCCATCACGTGCCAGAAATTTCAAATGAGAGACTCTACCACTGAAGACTCATGTTTCTTTTACAAACTGTGTAATCAGTCTTTATATATGTATTATTTAGTTTTTGTTGAAATTACCATGATCATTATTTACTTGTCTTTGTAAAGTGGGTTAAGAATTAGCATCTTAATTAGGTTTGTTTAAGGAACACGGTTCACAAAAGCTGTAACGAGTTtctcttacatttttttttttttttacaattaaggTGTTTAATGGGAAGTCATGTGTTTTTCAAAGGAAGACAGGCAGGGATGTTACCATCCCTTTGTTTAAAATGTGatgcttttttttaaacaatgtttTTCTTTAATTTTCTGCACTCAATATGTCTAAAATATAAAATTACTCTTAGTTAATGTGCTGTGTAGGCTCTGTGTTCAAAAAGTAGCCTAAGGCTGACAGATGGGTGTGTAGTTGGATTTTGGCAatcagaaacacaagcatatacagttgaagtcggaagtttacattacacttatgttggagtcattaaaacttgattttcaacca

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU723466 lncRNA downstream 1840 65159714 ~ 65160124 (-) True G636471
TU723467 lncRNA downstream 8668 65152091 ~ 65153296 (-) False G636472
TU723468 lncRNA downstream 9657 65151294 ~ 65152307 (-) False G636472
TU723470 lncRNA downstream 9657 65152091 ~ 65152307 (-) True G636472
TU723469 lncRNA downstream 10098 65151090 ~ 65151866 (-) False G636472
TU723560 lncRNA upstream 19951 65184663 ~ 65184984 (-) True G636557
TU723563 lncRNA upstream 25019 65189731 ~ 65189964 (-) True G636560
TU723570 lncRNA upstream 35223 65199935 ~ 65200134 (-) True G636567
TU723576 lncRNA upstream 45048 65209760 ~ 65236881 (-) False G636571
TU723662 lncRNA upstream 112812 65277524 ~ 65281548 (-) True LOC110528260
XM_021610149.2 mRNA downstream 115445 64987665 ~ 65046519 (-) True LOC110528252
XR_002474223.2 mRNA downstream 115446 64987665 ~ 65046518 (-) False LOC110528252
XR_005052637.1 mRNA downstream 172321 64987665 ~ 64989643 (-) False LOC110528252
XM_021608286.2 mRNA downstream 181493 64978825 ~ 64980471 (-) True LOC110527139
XM_036983835.1 mRNA downstream 219312 64927583 ~ 64942652 (-) True LOC110528251
XM_021610171.2 mRNA upstream 115641 65280353 ~ 65288559 (-) False LOC110528260
XM_021610172.2 mRNA upstream 115641 65280353 ~ 65288559 (-) False LOC110528260
XM_021610173.2 mRNA upstream 115641 65280353 ~ 65288560 (-) False LOC110528260
XM_021610177.2 mRNA upstream 143536 65308248 ~ 65323306 (-) False LOC110528263
XM_021610178.2 mRNA upstream 143536 65308248 ~ 65323307 (-) False LOC110528263
TU723536 other downstream 26169 65135538 ~ 65135795 (-) True G636533
TU723535 other downstream 27219 65134250 ~ 65134745 (-) True G636532
TU723292 other downstream 489948 64670850 ~ 64672016 (-) True LOC110528239
TU723175 other downstream 637783 64522514 ~ 64524181 (-) True LOC110528235
TU723015 other downstream 835734 64318194 ~ 64326230 (-) True G636055
TU723574 other upstream 69772 65234484 ~ 65236881 (-) True G636571
TU723769 other upstream 329078 65493790 ~ 65495157 (-) True G636719
TU724613 other upstream 716300 65881012 ~ 65882556 (-) True G637495
TU724622 other upstream 722224 65886936 ~ 65892402 (-) True G637504
TU724820 other upstream 1011248 66175960 ~ 66177895 (-) True G637669

Expression Profile


XM_021610165.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_021610165.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021610165.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.