RNA id: XM_021610197.2


Basic Information

Item Value
RNA id XM_021610197.2
length 3002
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110528269
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65467736 ~ 65478313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACTGGCGTAACAGAAAGGATATTTGAAGCCACTGCGCTCTCTGGTCTATTCTCAATCAGACGGGCAGTCGGTGGGGGCACGTCTGATTAGAAATCTACTTTTTAGGGACTCAATTGACACATTAAAGGATTACTACGCAAGTGACCAAATAAGGGAACGTGTAGCCTACTCTACACTTTGACCAATAATTATTTATTATACGAGGTTCCATACTTTGGATGAGTATGCTCTTTTTTTTCCATTATTGTGCAAGAGCCTTTAAACAACTTTAAAGATGAGTGTGAACATCTCCTCTCCCGCCCCGGCGCCTACTCGTCCCCTGCGGCTGAAGCGGCTGGAGCTGGACGACCCTCAGGATGACACGGAAGCCCTGAAATGCAAGCGTCCTCGGCTGAGCCTTCCACCCTCGTCCCCTGGCCTGGCCCCCTGCCTAAGGCCCCTGAGCCACAGCCCAGACTCCGACCAGCACTGTGTGTCCTGCATTGGGCCCTACGTCCTGCTAGAACCCACCGAGGGGACAGAGACCTACAGGGCCTTCCACAGGGTTACGGAGCAGGAGTACATCTGCAAGGTGTTCTCTATGAGGCGGTACCAGGAGTTCACCGCCCCCTACGTCCGCCTGCTGCCCCACGACAACATTTGCCGCATCGCCGAGGTGATAACAGGCGAGCAAAGCGTCTTTGTCTTCTTTCAGCGCAACTACGGCGACATGCACTCGTACGTGCGCACATGCAAGCGGCTCCAGGAGGAAGAGGCGGTGCTTCTCTTCCGCCAGATGGCGGTGGCGGTGACACACTGTCACAAGCATGGGGTGGTCCTGCGCGACCTCAAGCTGCGCAAGTTTGTCTTCGTAGACCAGCAGAGGACCAAACTTGTTCTTCAGAACCTGGAAGACTCCTGTCTGCTCCACGGGGACGACGACTCTCTTACGGACAAGCACGGCTGCCCGGCCTACGTGGGCCCAGAGATCCTCAACTCGCACCACTCGTACTCAGGGAAGGCTGCTGATGTCTGGAGCCTGGGCGTGGTGCTCTACACCATGCTGGTGGGTCGCTACCCGTTCCAGGATGTGGAACCTGCCGCTCTCTTTAGTAAGATCCGCCGGGGGACCTTCACAGTGCCAGAGTCGCTCTCGGTGCGGGCTAAGTCGCTGGTGTGCTGCATGCTGCGTAAAGCACCCTTGGAGAGACTGGAGGCCTCAGAATTGCTGCTCCACCCGTGGCTGAACTGTTCCAATAACACAACACCTCCCAACATGCACCTCAACCCCAGGAACTGCACTGACCAAGTGGTCCCCAACTACACAGAAGATACTAAGGACACAGGCTGTTTctagaataaaaataaaaatgtcctcTGTCCCAGTGATGCAAGTAGAGCAGTATCATCTCCATAGAGGGACTACTGGTAATGCAGGGTTTTTTCCTACCTACCTGACACTTAAGAAACATAACATAGTCACATGGCATTACATATTTCCAAAGTAAACCTCTTATGCTAATGTCTAACTGCAGTTTGGTATCAAAGCAGTCAAGCTTTGTTAATCTGTTGTTAGACATTAGCATGTATAGATGTTGAAGTTGTGCTTTTGAAGAAGTTGTGAACGTGTTATGCAGGGCCCTTAATCCAAATTGTTACCAAATGTATTATATAGTTCGGTGTCATGAAGCATGTATTTGTTTAGGTAGTGACATTGCGGTTACGCAAAgcagtaactactaactactggATCTCCTGGCAACGTGTAACAGACGCCTCCTTCGAGTTAGATGTATATCTGCTTGTCAAGGGTCCAATGCAGTTATTTCCACACTGCAGTGTAACCTCAAGAAAAGCGCTTTTCAAAAGCTACCCAACTATTGTGCTTTAACCAATGGACATTGTTTTGTTGACTCAATGGGAATAACAGGTGAAAACAGTCCTCGGGATCCCTTGCCCCATATAGAAGCAGACTGTCTAGCAGTATTCCCTTTTTGCTGGAAGCAGTAATTTGACCCATTTTTGATTGTGAGCAACTCTGTTGGGACACTAAATTGAagctgtatactgaacaaaaatgtaaacacaacaatttcaaagattttactgagttacagttcatagaaggaaatcagtcaactgaaataattTAATttgtccctaatctatggatttcacatgactgggcaggggcgcaggaGGAGCCCACTGCAGAGCCAGgcctagccaatcagaatgaggttTTCTCCACAAAAGAGcttaattacagacagaaatagttCTCagcaccccctcccccctcagacgattccgcaggtgaagaagccggatgtggcggtcgtgggctggcgtggttacatgaggtctgcggttctgaggccggttagacgtactgccaaatgtTCTAAAATTactttggaggcggcttatgatagagaaattaacattttatctctggcaacagctctgttggacatttcttcagtcagcatgcaaattgtacatctgtggcgttgtgtgacaaaactacattGTATTGTCCTCAGCAGCAGGTGCACCTGTGTTatcatcatgctgtttaatcagcttcttgatatgaaacacaggagaaatgctcaccaacaggaatgtaaacaaatttgtgcacaagatTTGAGAAAAGCATTTTGTcttatggaaaatgtctgggatcttttatttcagctcatgaactgtaacctttatttaactaggcaagtcaattaagaacaaattgttatttacaatgacagctgaccccggccaaaccaggacgatgctgggccaattgtgcacatgAAACATGTGATCttctttacatgttgcgtttttatttttgttcagtatatatctgACAGGATTGATACCTGATGCCTCTGAACTTGACAAAATCCTAGAATACTTGAAGCACGTTTTGTGCCTTTGTTTGTGTGTACTGTTGTTTACATATTTGAGTGACAAATCTGGATCGTTTCAACCATTAAAGTGCCTTGTTTTCATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003714 transcription corepressor activity molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08814 TRIB1_2; tribbles homolog 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU723756 lncRNA downstream 19424 65448080 ~ 65448312 (-) True G636707
TU723755 lncRNA downstream 20116 65447412 ~ 65447620 (-) True G636706
TU723753 lncRNA downstream 31088 65436366 ~ 65436648 (-) True G636704
TU723752 lncRNA downstream 33801 65433725 ~ 65433935 (-) True G636703
TU723704 lncRNA downstream 102035 65365464 ~ 65365701 (-) True G636661
TU723773 lncRNA upstream 17895 65496208 ~ 65496582 (-) True G636720
TU723774 lncRNA upstream 20395 65498708 ~ 65513913 (-) True G636721
TU723776 lncRNA upstream 20904 65499217 ~ 65578389 (-) True G636722
TU723833 lncRNA upstream 108291 65586604 ~ 65589936 (-) True sox12
TU724510 lncRNA upstream 226707 65705020 ~ 65705229 (-) True G637403
LOC118965360 mRNA downstream 10476 65451173 ~ 65457260 (-) True LOC118965360
LOC110529000 mRNA downstream 105237 65360070 ~ 65362499 (-) True LOC110529000
NM_001124726.1 mRNA downstream 120468 65344022 ~ 65347268 (-) True LOC100136780
XM_021610179.2 mRNA downstream 124970 65337198 ~ 65342766 (-) True LOC110528265
XR_002474224.2 mRNA downstream 140640 65325140 ~ 65327096 (-) False LOC110528264
XM_021610202.2 mRNA upstream 108286 65586599 ~ 65593329 (-) False sox12
XR_005052638.1 mRNA upstream 203138 65681451 ~ 65687986 (-) True LOC118965313
XM_021610211.2 mRNA upstream 241741 65720054 ~ 65744788 (-) False LOC110528276
XM_021610212.2 mRNA upstream 241741 65720054 ~ 65744788 (-) True LOC110528276
XR_002474225.2 mRNA upstream 308628 65786941 ~ 65796175 (-) False LOC110528277
TU723574 other downstream 230855 65234484 ~ 65236881 (-) True G636571
TU723536 other downstream 331941 65135538 ~ 65135795 (-) True G636533
TU723535 other downstream 332991 65134250 ~ 65134745 (-) True G636532
TU723292 other downstream 795720 64670850 ~ 64672016 (-) True LOC110528239
TU723175 other downstream 943555 64522514 ~ 64524181 (-) True LOC110528235
TU723769 other upstream 15477 65493790 ~ 65495157 (-) True G636719
TU724613 other upstream 402699 65881012 ~ 65882556 (-) True G637495
TU724622 other upstream 408623 65886936 ~ 65892402 (-) True G637504
TU724820 other upstream 697647 66175960 ~ 66177895 (-) True G637669
TU724874 other upstream 798469 66276782 ~ 66277080 (-) True G637722

Expression Profile