RNA id: XM_021610213.2


Basic Information

Item Value
RNA id XM_021610213.2
length 3553
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC110528278
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65811441 ~ 65857952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACCCCTCCGCCACCCTGAGTCTGCTACTCACTGCCTTTCCTCACCTCATAGTCGAGAACAGAGGAACGGAATGGATACGGAAGGGAGCCAAAGCAGCCTGTCCTCGGTGGACAACTCCCCCCACGACCCTTGCAAAATGTTCATCGGGGGTCTCAGTTGGCAGACAACACAAGAGGGTTTGaatgaatacttctgtaaattcGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCAGTTACGAAGAGATCAAGGGGATTCGGGTTTGTCACATACATAGACCAAGCTGGTGTGGATAAAGTTTTGGCGCAAAACAGACATGAGCTGGATTCTAAAACAaTTGATCCCAAGGTAGCGTTTCCTCGTAGAGCCCAGCCCAAGCTGGTGACCAGGACAAAGAAGATATTTGTGGGAGGTCTCTCTGTGAACACAACCATCGAAGACGTCAAGCAGTACTTTGACCAGTTTGGAAAGgtTGATGATGCCATGCTCATGTTCGACAAAACCACCAACAGACACAGAGGTTTCGGCTTTGTGACCTTTGAGAATGAAGACATGGTGGAAAAAGTGTGTGAGATCCACTTCCAcgaaatcaacaacaaaatgGTGGAGTGCAAGAAAGCCCAGCCCaaggaagtgatgtcaccgaCGGGTACGGCTCGAGGTCGTGCCAGGATTATGCCCTACGGCGTGGACGCTTTCATGCTGGGGATCGGCATGCTGAGCTACCCAGGCTTCCAAGCAGCTACGTACGCTAGCCGCAGCTACCCTGGCATCGCTCCTGGATACACCTACCAGTTCCCTGAATTCCATTTAGAGAGGACCCCCCTTCTGACATCACCCCACCCCTCTGAGCTCACAGcCATTCCACTGTCAGCCTACGGACCAATGGCAGCGGCAGCAGCAGCTGCTATGAGAGgTTCCACCCAGTCACGTAACTCAGGCTACCTGGGCACCAGCAGCCCTGGGCCAATGGCTGACCTGTATGCAGCAGCAAGTCAGGACTCAGCAGTCAGCAGCTATCTCAGCACAGCCAGTCCTGGCCCCAACTCAGGATTTGGCCACGGTCTCGGGGGTCCTCTGATCGCAGCCTTTACCAACGGGTACCACTAAGTAGATTCAGCCAATCACCGGACACGGAAGGAGGTTTCTTCTGCTGACGAGCCAATCAAACTGCTGTGTGCCTACCCATGGCACAATCCAATTGGCAGCCACAGGTCAAACCCCACCCCTGGCTCCCTCTGAATCCACCCACCGACTGAAGaagatattttatattttagactcCTGTATCTTGTATTACTGTACTAATATCACTTCCTCTTCTCAGTCCCCCCTTGTTTCTTCTATTCTTTACCTTCACGTAGGTTTATTTAATTAGATTCCAATGCTGTTTCTTTTTAAAAATATTGTTCTGACAGAAAAATACATGTGAAAAGAACGACTGTGGGTTGCGCTCATGGCAaacacagattctgtcagataTATTTTTACTTTATATCTGAGGAATTTCTATTTAATCACAATGTTTTGATTTATTGTCTGCTCCTTTGACCTCCCTTTAATGTGTTActgaggtgagatggagagaacgaggagaatagaggggtagagagaactGAAATGGTGTGTGGGATTGGGTCTCCTTGTCAAAAGGAGTTCCTAACCCATTTTAAACAGTGGAAGAACAAAGAAATGATGTCCCAGGAAACATGAAAAGAAaactaaaatgtatattttgatagtttttaaaacaaaacatttgtaaTATTGTTATTAATATTGAACGTAATGGTGATAATCGGTAAGGTATTTTATTCCGTAATTGGTTTTGAAAGGAATATTTTATTTCCTTCCTGTAAAATATTGTATATAGAGTTTGAGGGGGGGTTGTACTTTGATTGGCAGGTAAGGTTACTATTAATCGTTCGGGCGCCATTTAAACTGGAAGTCTTTTTAACTTCTACTTGAAAGTGGCTATCCCCTAAGCATTTGTTTAGTGTTTAGGCCAACAACATGCATGAGCAGGGTTGAAGACTAGATGATATTTGTAAATAAGTCGGAATGATAAGATCCTATTCATTAGAAATTGGTTTCAGAGATGATCCAAAAGTAACAACAAGAGAACACGCTTGAATTTACATGCGGTTGAGTTTCATTCCGTGTCTTACTGTTAACATTTATTAACTGTAGTGTGTGAATTCCAAATCTGCATTTTGTCATACAGCGCTACAACAGAGTTATTTTTGATGTGTGCCAGTAACCGGTTTCTATTGAATCGTGCCCCTTAAAGGCACAGTCTTATCACGTCACATGAAcataaaaatataattacttgaatGGGGATTTCCATTCTAGTAATTCTAGTTATATGGACATGACATCCACGTATCCCTCAGAAGAACTTGAATTGGAACAGATGATTGGATAAGGAAAAACTTAAATGAGGCCCTGTTTTTTTAATATATTGGCTATGGTGAGGGTGCATGGGTGGGGTTAAGGGGGATTGGTGGGATATATTTTGTGCTATTTTAGGTATATTTTGCGCTATTTTCCTTCATtatgttttttctttctttcttggtGTTCAATGTACAGGTCATATGGACCATAGAAACAAATGAAGGACTTACTTAACAAAGCAATTGACTCTTAAAATACTATTACATCATGGTTGTATTTGTCCTCTGATGACTTTTGAAAGTGCGAGTGTCATTatgtgtgaaagtgtgtttgtgtgtgagtgtttgtgtacaCGCACAATAGTGAGGTGAAGTATGGAACTAGCTACATTCGACAGTTGAGATGCATTTTTAAAATTTTGGTACAGCCATTTTGGTACTGATATGTTTGCCTGGTTCCATTTAGTCTAACACCCCGCACATAGGGACTAGGGCTAGATATATCCAAATAGAATAGGGCCTCTGTCCCAGTCAGTACAGAAAATAGGTATACACAGACCAGTAgctggaagggaggaggagacagagtgTCAAAGCTATTTCAATGAGAATCACATGAATTTTGTATATTTTCCTCAAAGTCTTCCAATAAACATGAAAAAGAATCTCCCATTTTGAACTGGCTAGTACTGCCCTTTTCCGACTGGCTGGGTCACTACACAAAACTACTGCTGGACACGAACACTGTAACTTTTTAACTTACAAAAAGCAATAAGTTATTTTTTACCTTAGAAATGATAATGATATTAATAGCAATATGAGTATTGATAATTCCATGGCATTAAGACTTATTTTCAGaacaaaaaaaactatatttttcttTTGTACGATTTCGTTCCCCATGTACAATAATGATTCAGTGATTTTTAAGACACTGGTGTTTTTTGTTTGTGTTGATGCTTTCTTCAGGGTCGGGAAAGGGGCAAGGCCTTGGTTGTTAAAACTCCAAGGTCTTTACCAACACTGTAACTAAACTTTTATTTGGACTGTTCCCCGCCCGCTTTGTCATATGTATTTCTTATTTTGTTCTACTCTGGAAATTTCAATTTTACAATTCCTAATAAATTATTTTAAAGCATTCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU724573 lncRNA downstream 15378 65785569 ~ 65796063 (-) False LOC110528277
TU724574 lncRNA downstream 15378 65785569 ~ 65796063 (-) False LOC110528277
TU724575 lncRNA downstream 15378 65785569 ~ 65796063 (-) True LOC110528277
TU724564 lncRNA downstream 35016 65776188 ~ 65776425 (-) True G637454
TU724562 lncRNA downstream 37331 65773709 ~ 65774110 (-) True G637452
TU724653 lncRNA upstream 52080 65910032 ~ 65917898 (-) True G637531
TU724656 lncRNA upstream 56910 65914862 ~ 65922845 (-) True G637533
TU724696 lncRNA upstream 134078 65992030 ~ 65993165 (-) True G637566
TU724732 lncRNA upstream 181250 66039202 ~ 66065481 (-) False G637595
TU724733 lncRNA upstream 181250 66039202 ~ 66065481 (-) True G637595
XR_002474225.2 mRNA downstream 15266 65786941 ~ 65796175 (-) False LOC110528277
XM_021610211.2 mRNA downstream 66653 65720054 ~ 65744788 (-) False LOC110528276
XM_021610212.2 mRNA downstream 66653 65720054 ~ 65744788 (-) True LOC110528276
XR_005052638.1 mRNA downstream 123455 65681451 ~ 65687986 (-) True LOC118965313
XM_021610202.2 mRNA downstream 218112 65586599 ~ 65593329 (-) False sox12
XM_021610218.2 mRNA upstream 9541 65867493 ~ 65871583 (-) False LOC110528280
XM_036983865.1 mRNA upstream 9541 65867493 ~ 65871588 (-) True LOC110528280
XM_021610223.2 mRNA upstream 71228 65929180 ~ 65942125 (-) False LOC110528283
XM_021610222.2 mRNA upstream 71228 65929180 ~ 65942126 (-) True LOC110528283
XM_021610220.2 mRNA upstream 84249 65942201 ~ 65952623 (-) False si:dkey-81j8.6
TU723769 other downstream 316284 65493790 ~ 65495157 (-) True G636719
TU723574 other downstream 574560 65234484 ~ 65236881 (-) True G636571
TU723536 other downstream 675646 65135538 ~ 65135795 (-) True G636533
TU723535 other downstream 676696 65134250 ~ 65134745 (-) True G636532
TU723292 other downstream 1139425 64670850 ~ 64672016 (-) True LOC110528239
TU724613 other upstream 23060 65881012 ~ 65882556 (-) True G637495
TU724622 other upstream 28984 65886936 ~ 65892402 (-) True G637504
TU724820 other upstream 318008 66175960 ~ 66177895 (-) True G637669
TU724874 other upstream 418830 66276782 ~ 66277080 (-) True G637722
TU726292 other upstream 1197702 67055654 ~ 67079059 (-) True LOC110528300

Expression Profile