RNA id: XR_005052739.1



Basic Information


Item Value
RNA id XR_005052739.1
length 129
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC118965413
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 66128239 ~ 66128367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCAGGATAAGTTACAGTGCAGCTTGTTCAGTACTGCTCTGTCGTTCCCCTTGCACACATTAACCTGTCTCCtactatccctgtctgtctgcatcccACGGCAGGCAGGGACGCTTGGTCTCAGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU724732 lncRNA downstream 62758 66039202 ~ 66065481 (-) False G637595
TU724733 lncRNA downstream 62758 66039202 ~ 66065481 (-) True G637595
TU724696 lncRNA downstream 135074 65992030 ~ 65993165 (-) True G637566
TU724656 lncRNA downstream 205394 65914862 ~ 65922845 (-) True G637533
TU724653 lncRNA downstream 210341 65910032 ~ 65917898 (-) True G637531
TU724773 lncRNA upstream 4097 66132464 ~ 66133957 (-) True G637634
TU724771 lncRNA upstream 8095 66136462 ~ 66139801 (-) True G637632
TU724799 lncRNA upstream 34627 66162994 ~ 66163208 (-) True G637660
TU724802 lncRNA upstream 40993 66169360 ~ 66169678 (-) True G637663
TU724804 lncRNA upstream 43602 66171969 ~ 66172182 (-) True G637665
XM_021610241.2 mRNA downstream 1361 66118666 ~ 66126878 (-) False golga7
XM_021610242.2 mRNA downstream 1376 66119778 ~ 66126863 (-) True golga7
XR_005052645.1 mRNA downstream 9766 66082552 ~ 66118473 (-) False r3hcc1
XR_005052737.1 mRNA upstream 1294 66129661 ~ 66129803 (-) True LOC118965411
XR_005052738.1 mRNA upstream 1822 66130189 ~ 66130317 (-) True LOC118965412
XM_021610244.2 mRNA upstream 11862 66140229 ~ 66158673 (-) False LOC110528295
XM_021610243.2 mRNA upstream 11862 66140229 ~ 66204313 (-) True LOC110528295
LOC110529002 mRNA upstream 85494 66213861 ~ 66216016 (-) True LOC110529002
TU724622 other downstream 235837 65886936 ~ 65892402 (-) True G637504
TU724613 other downstream 245683 65881012 ~ 65882556 (-) True G637495
TU723769 other downstream 633082 65493790 ~ 65495157 (-) True G636719
TU723574 other downstream 891358 65234484 ~ 65236881 (-) True G636571
TU723536 other downstream 992444 65135538 ~ 65135795 (-) True G636533
TU724820 other upstream 47593 66175960 ~ 66177895 (-) True G637669
TU724874 other upstream 148415 66276782 ~ 66277080 (-) True G637722
TU726292 other upstream 927287 67055654 ~ 67079059 (-) True LOC110528300
TU726459 other upstream 1118265 67246632 ~ 67275540 (-) True LOC110528308
TU726566 other upstream 1286489 67414856 ~ 67416090 (-) True G639226

Expression Profile