RNA id: TCONS_00034261


Basic Information

Item Value
RNA id TCONS_00034261
length 1845
lncRNA type antisense
GC content 0.45
exon number 2
gene id XLOC_017199
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 14657141 ~ 14661432 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggcttgcagaataaaccattctaactacagtttggtctcttctcatgtctccgggtcgacctgatgaactttgctgaatctggtgcctaatataggggaaatcttacagatctgggggctcgtccgggatacatCTGATCAGACTCTCTTTGTTTTACAGATTTTGGGGGCCCCCTCAGCACAACTGACACCTCTGCAACCGCGCAACCGTTTCTGGATATCCTAGAGCAGGGGTCAGCATGACTTCCTTTTTGCTGCGGACAATTGGACTGTTTCTCTTTCTTGTTGCTCAAGCTAATGCAGCCAGGCTGAAACGCTGGACACATGATCATGAATTTGGATGGGCAGAGGATGGGGCTGACAATCCAATTGAAATAATATGTGGTATCAATATGTAAATGAGTTTTAGCTAGGTCATATAATGTATCTGGTTGTTATGTATGTTCTGTTATGCCTCATTCAGCCAAGCAAACCCCTCTTTATGCCAAACCCATGAATAAGACCTCTGCTAAATGTTTTGCCAGTTTTGCAGGATCAGGGTACCAGGACCCATATATATAATTGTCGATGACTACGATCCATACCGGATTGGCATTAGAAATGGTACATGTGATGCTCTATTTTGGGTAAAATTTGGCCATGCTAAACCCTCACCTATTAGCCACAAGGTTTTTATTAACCACTCTATTACACACCCTGTGTGTTATAACCAGACCATGGGCTCTCATTTCATGGGAAGCACTGTTAACTGTCAACAAATTGCCTCCTCGGGAGAGGGGGCCCCAGTCGACATCTCAGGACCCTCAAATGGCACTTATGTGGTCCAGGGTGGGTGGTGGTTGTGTGGGAAAAACGCCTACATGTCCCTACCGGCCAACTGGACGGGGCAGTGTGCCCCTGTGCATGTGACTGATCACACTTTTATTGTGACAGCCCAGGTCCTGTCAGCGCAGCGAAGAGTTAAACGCAGTGTCCCTGAAATGAAGCCCCATGACTCTGTATGGGGTACTCACGTGCCCGAGGATTTCAAATTATGGACCACTGGTAGTAAAATGGTATTGGCTCTATTTCCGCAAATAGGTGTGGGAAAAGCTCTACTAAGAATCGAGACCCTGGACTATCGCATGGGCCTATTTCTGAATGcctcaaaaataattaatgaggcCCAGAATAAGGAGCTGGGTAATCTACGTACCATGGTTTTGCAAAATAGAGTGGCTCTAGATCTCTTAACAGCATCCCAGGGGGAGGTATGTAAATGAGTACTGCTATGTCTACTCTCCAAGGGTTAAAAATTGCTATGACTTCTGATTATGTCCCAGACACCACATGGGGTTGGATGATGGGTCTGTTCGGCTGGGTGACTCCTTTCCTTACTATGATAATTcctgtatgtattattttccttCTTGTTTGTTGTTGTGGTCCTTTTCTCTTGCAATGTTTAATGAATCGAATCTATGCCACAATGGACAGTATGATGGGTCAACGATATGATAAGATTCCTCTGTGTTAGGCCTTTGGCCTAAAAGAGGGGACTGAGAGAACATATTGTCCTCTTTTTAGTGTGCTTGCAGCTACGTGCAGAAGTGTCtgtggttttttgtgtgtgtgtgtgcatcggaGGTCTGAAGGTCAACGTCTGGTTTCGGTCTTGCAGACAGCTCCCACACTGGATGGAAAGCCCcgctatatatacatttcttctTTATTCTGTTTGTATAACATGCCCATATTAAGAGTGTCTTCCTTCTTCTGTATAACTTTTAAAGGTCAGCCCACTATGTATATATGTCCCTGCTCATCCTTATCATCAggcttgcagaataaaccattctaactaca

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0098794 postsynapse cellular_component
GO:0019842 vitamin binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036560 lncRNA upstream 33223 14487757 ~ 14623918 (+) False XLOC_017198
TCONS_00036561 lncRNA upstream 33223 14611048 ~ 14623918 (+) True XLOC_017198
TCONS_00036559 lncRNA upstream 150625 14487757 ~ 14506516 (+) False XLOC_017198
TCONS_00036558 lncRNA upstream 509657 14144076 ~ 14147484 (+) True XLOC_017196
TCONS_00036557 lncRNA upstream 615923 14014812 ~ 14041218 (+) True XLOC_017194
TCONS_00034265 lncRNA downstream 214028 14875460 ~ 14875546 (+) True XLOC_017202
TCONS_00034266 lncRNA downstream 216207 14877639 ~ 14877738 (+) True XLOC_017203
TCONS_00034270 lncRNA downstream 306681 14968113 ~ 14984108 (+) False XLOC_017205
TCONS_00036562 lncRNA downstream 394564 15055996 ~ 15058705 (+) True XLOC_017208
TCONS_00036563 lncRNA downstream 450304 15111736 ~ 15114901 (+) True XLOC_017209
TCONS_00034260 mRNA upstream 182236 14465973 ~ 14474905 (+) True XLOC_017197
TCONS_00034259 mRNA upstream 538845 14114258 ~ 14118296 (+) True XLOC_017195
TCONS_00034258 mRNA upstream 659306 13969414 ~ 13997835 (+) True XLOC_017193
TCONS_00034257 mRNA upstream 697927 13956106 ~ 13959214 (+) True XLOC_017192
TCONS_00034256 mRNA upstream 743351 13894123 ~ 13913790 (+) True XLOC_017191
TCONS_00034262 mRNA downstream 127716 14789148 ~ 14806671 (+) False XLOC_017200
TCONS_00034263 mRNA downstream 127873 14789305 ~ 14805958 (+) True XLOC_017200
TCONS_00034264 mRNA downstream 149454 14810886 ~ 14815492 (+) True XLOC_017201
TCONS_00034267 mRNA downstream 279832 14941264 ~ 14949443 (+) True XLOC_017204
TCONS_00034268 mRNA downstream 306599 14968031 ~ 15001305 (+) False XLOC_017205
TCONS_00034240 other upstream 1347731 13175801 ~ 13309410 (+) False XLOC_017186
TCONS_00034241 other upstream 1421023 13234944 ~ 13236118 (+) True XLOC_017186
TCONS_00034232 other upstream 2051308 12598637 ~ 12605833 (+) True XLOC_017178
TCONS_00034225 other upstream 3927862 10723727 ~ 10729279 (+) False XLOC_017170
TCONS_00034217 other upstream 4167251 10489621 ~ 10489890 (+) True XLOC_017166
TCONS_00034272 other downstream 306705 14968137 ~ 15001305 (+) False XLOC_017205
TCONS_00034274 other downstream 337524 14998956 ~ 14999072 (+) True XLOC_017206
TCONS_00034279 other downstream 891275 15552707 ~ 15553447 (+) True XLOC_017213
TCONS_00034290 other downstream 1618531 16279963 ~ 16283039 (+) False XLOC_017222
TCONS_00034293 other downstream 1618924 16280356 ~ 16283039 (+) False XLOC_017222

Expression Profile

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