RNA id: XM_021610472.2


Basic Information

Item Value
RNA id XM_021610472.2
length 1181
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC110528421
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 71496172 ~ 71498571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAACCACGTGGTTTGCGGCTGAGTTGTTTGGAGTGCATAAAATTGGAATCCAATCCCGTTTTAAAGGTGAGAAAATAGGCGTTCTGTTTTTAAGTTAATTTAAGATTTATCGTTAGAAAATGGCACCTAAAAAAACGGTAGCCCCCGAAGAAGGAATCGCATCTTCTGAATCACCCAATAAAGATGAGAAAGTGTCGGGAAAAGCTAAATCCGAGTCCAGCAAAGCACCTGATGTGGCAAGGAAAACCCACCTTCATCCACCAACGATGATAATGGTCAAAGAAGCGCTGAAGGAATTGGACTCTCGAAAGGGTGTTTCCTCGCAGGCCATTCGTAGTTACATAACAGAGAAATATCCATCTTTGGACCAGGTGAGGTTGAAGTACATGATGCGCAAGGCCCTGAACAAAGGAATTGAGAGCGGGGTATTAGCGAGGCCACCTAACTCCACTGCAAGCGGCGCACAGGGGAGGTTTCGGCTTGCAGTCAGGGGTAAATTGAAGGAGCCCAAGCTTAAGGCCACTGAGAACACTGATCCCAATGTGGCGAAGGCCTCCAAGGCTGGAGCCAAGAAGACCAAGGAGAAGGAAGCAGTTTCTGAGAGACGGACTACAGCCAAAAAGGAGAAGACTTCAGAGGATGCAAAACCCAAGAAGGCTCCTGGTGGCTCCAAGGTGGCCCCTACGAAGAAGCCCAAGGCGACGAGGCCTGCAGTGGAAGGAGGGGCTGAGGTGGCTGCTGAGGACCAGCCCAAAGCACTGAAGACTACCAAAGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCAGCCAAGAAGGGCGAGGGGGCTCCTGCTGCTAGAACCACAGGGAAACGAGGCAAGAAAGGAGCAGCTGAGTGATCTCCTGTCATCCAAATGTGGGTTTTAAAGATTCACTGTTTTTGAATAAAGCTTCTTTTTTGACGTTGTTGCGGTATCCTTTAGTGTAGAACTGCATACTAAACTCAGCGGCAAcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU731501 lncRNA downstream 30010 71464796 ~ 71466162 (-) False G643648
TU731502 lncRNA downstream 30010 71464796 ~ 71466162 (-) True G643648
TU731437 lncRNA downstream 93477 71402200 ~ 71402695 (-) True LOC110528413
TU731485 lncRNA downstream 104070 71391746 ~ 71392102 (-) True LOC110528411
TU731416 lncRNA downstream 204033 71289567 ~ 71292139 (-) True G643582
TU731584 lncRNA upstream 30884 71529396 ~ 71529634 (-) True G643713
TU731626 lncRNA upstream 87429 71585941 ~ 71586499 (-) True G643745
TU731639 lncRNA upstream 114280 71612792 ~ 71613029 (-) True G643758
TU731643 lncRNA upstream 118900 71617412 ~ 71617637 (-) True G643762
TU731766 lncRNA upstream 330971 71829483 ~ 71829709 (-) True G643854
XM_021610462.2 mRNA downstream 43486 71440153 ~ 71452686 (-) True LOC110528414
XM_036983993.1 mRNA downstream 66675 71420262 ~ 71429497 (-) True LOC110528416
XM_021610465.2 mRNA downstream 76443 71416150 ~ 71419729 (-) True LOC110528417
XM_021610460.2 mRNA downstream 83904 71402972 ~ 71412268 (-) True LOC110528412
XM_021610461.2 mRNA downstream 93538 71398622 ~ 71402634 (-) False LOC110528413
XM_036983997.1 mRNA upstream 37833 71536345 ~ 71612388 (-) False LOC110529018
XM_036983998.1 mRNA upstream 37833 71536345 ~ 71612388 (-) True LOC110529018
NM_001124328.1 mRNA upstream 148891 71647403 ~ 71774345 (-) True LOC100135991
XM_036984449.1 mRNA upstream 290014 71788526 ~ 71791153 (-) True LOC118965362
XM_021610477.2 mRNA upstream 331656 71830168 ~ 71839230 (-) True LOC110528426
TU731406 other downstream 217392 71275083 ~ 71278780 (-) True LOC110528404
TU731325 other downstream 289365 71204276 ~ 71206807 (-) True LOC110528398
TU731316 other downstream 292171 71199636 ~ 71204001 (-) False LOC110528398
TU731198 other downstream 614747 70879911 ~ 70881425 (-) False LOC110528382
TU731733 other upstream 258407 71756919 ~ 71758810 (-) True G643823
TU732840 other upstream 545709 72044221 ~ 72066123 (-) False G644738
TU732845 other upstream 547442 72045954 ~ 72066123 (-) False G644738
TU733319 other upstream 1202197 72700709 ~ 72703722 (-) True G645145
TU733350 other upstream 1219234 72717746 ~ 72718449 (-) True G645156

Expression Profile